Structure of a human monoclonal antibody Fab fragment against gp41 of human immunodeficiency virus type 1.

Abstract:

:The three-dimensional structure of a human monoclonal antibody (Fab), which binds specifically to a major epitope of the transmembrane protein gp41 of the human immunodeficiency virus type 1, has been determined by crystallographic methods to a resolution of 2.7 A. It has been previously determined that this antibody recognizes the epitope SGKLICTTAVPWNAS, belongs to the subclass IgG1 (kappa), and exhibits antibody-dependent cellular cytotoxicity. The quaternary structure of the Fab is in an extended conformation with an elbow bend angle between the constant and variable domains of 175 degrees. Structurally, four of the hypervariable loops can be classified according to previously recognized canonical structures. The third hypervariable loops of the heavy (H3) and light chain (L3) are structurally distinct. Hypervariable loop H3, residues 102H-109H, is unusually extended from the surface. The complementarity-determining region forms a hydrophobic binding pocket that is created primarily from hypervariable loops L3, H3, and H2.

authors

He XM,Rüker F,Casale E,Carter DC

doi

10.1073/pnas.89.15.7154

keywords:

subject

Has Abstract

pub_date

1992-08-01 00:00:00

pages

7154-8

issue

15

eissn

0027-8424

issn

1091-6490

journal_volume

89

pub_type

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