Construction of macromolecular assemblages in eukaryotic processes and their role in human disease: linking RINGs together.

Abstract:

:Members of the Really Interesting New Gene (RING) family of proteins are found throughout the cells of eukaryotes and function in processes as diverse as development, oncogenesis, viral replication and apoptosis. There are over 200 members of the RING family where membership is based on the presence of a consensus sequence of zinc binding residues. Outside of these residues there is little sequence homology; however, there are conserved structural features. Current evidence strongly suggests that RINGs are protein interaction domains. We examine the features of RING binding motifs in terms of individual cases and the potential for finding a universal consensus sequence for RING binding domains (FRODOs). This review examines known and potential functions of RINGs, and attempts to develop a framework within which their seemingly multivalent cellular roles can be consistently understood in their structural and biochemical context. Interestingly, some RINGs can self-associate as well as bind other RINGs. The ability to self-associate is typically translated into the annoying propensity of these domains to aggregate during biochemical characterization. The RINGs of PML, BRCA1, RAG1, KAP1/TIF1beta, Polycomb proteins, TRAFs and the viral protein Z have been well characterized in terms of both biochemical studies and functional data and so will serve as focal points for discussion. We suggest physiological functions for the oligomeric properties of these domains, such as their role in formation of macromolecular assemblages which function in an intricate interplay of coupled metal binding, folding and aggregation, and participate in diverse functions: epigenetic regulation of gene expression, RNA transport, cell cycle control, ubiquitination, signal transduction and organelle assembly.

journal_name

Curr Protein Pept Sci

authors

Kentsis A,Borden KL

doi

10.2174/1389203003381478

keywords:

subject

Has Abstract

pub_date

2000-07-01 00:00:00

pages

49-73

issue

1

eissn

1389-2037

issn

1875-5550

journal_volume

1

pub_type

杂志文章
  • Outline of proteins and signaling pathways involved in heart failure.

    abstract::Heart failure (HF) is a condition with high mortality worldwide characterized by persistent progression. Myocardial hypertrophy is a dominant feature during the early stage of HF. The development of HF is a complex process related to a series of physiologic and molecular factors. Although the treatment of HF has been ...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920312804142084

    authors: Bi Q

    更新日期:2012-11-01 00:00:00

  • The archaeal Sac10b protein family: conserved proteins with divergent functions.

    abstract::Here we review the present state of structural and functional studies of the Sac10b protein family, a class of highly conserved 10 kDa nucleic acid-binding proteins in archaea. Based on biochemical and structural studies, these proteins were originally assigned a role in the structural organization of chromatin; Sac10...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920312800785067

    authors: Xuan J,Feng Y

    更新日期:2012-05-01 00:00:00

  • Biosynthesis of Carnosine and Related Dipeptides in Vertebrates.

    abstract::Carnosine (β-alanyl-L-histidine) and its methylated derivatives: anserine (β-alanyl-Nπ- methyl-L-histidine) and balenine (β-alanyl-Nτ-methyl-L-histidine) are abundant constituents of excitable tissues of vertebrates. While carnosine and anserine are present at high concentrations and in variable proportions in skeleta...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203719666180226155657

    authors: Kwiatkowski S,Kiersztan A,Drozak J

    更新日期:2018-01-01 00:00:00

  • The problem of amino acid complementarity and antisense peptides.

    abstract::The review presents three hypotheses concerning the amino acid complementarity: 1) the Mekler-Blalock antisense hypothesis; 2) the Root-Bernstein approach based on stereochemical complementarity of amino acids and anti-amino acids coded by anticodons read in parallel with the coding DNA strand; 3) Siemion hypothesis r...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203043379413

    authors: Siemion IZ,Cebrat M,Kluczyk A

    更新日期:2004-12-01 00:00:00

  • Determining the orientation and localization of membrane-bound peptides.

    abstract::Many naturally occurring bioactive peptides bind to biological membranes. Studying and elucidating the mode of interaction is often an essential step to understand their molecular and biological functions. To obtain the complete orientation and immersion depth of such compounds in the membrane or a membrane-mimetic sy...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920312800785049

    authors: Hohlweg W,Kosol S,Zangger K

    更新日期:2012-05-01 00:00:00

  • Isoform Separation by a Mixed-mode Resin, TOYOPEARL MX-Trp-650M.

    abstract::TOYOPEARL particles are cross-linked hydroxylated methacrylic polymers available in different pore and particle sizes. They are conjugated with different ligands to generate ion-exchange, hydrophobic interaction and affinity resins. They have excellent physical and chemical properties. A mixed-mode resin, TOYOPEARL MX...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203718666171009111355

    authors: Arakawa T

    更新日期:2019-01-01 00:00:00

  • Amyloidogenicity of p53: a hidden link between protein misfolding and cancer.

    abstract::Pathogenic aggregation is closely associated with various protein misfolding diseases such as type 2 diabetes mellitus and Alzheimer's disease. Amyloidogenic proteins that have a propensity to assemble into amyloid oligomers and fibrils form the aggregates. The tumor suppressor p53, a transcription factor that regulat...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:

    authors: Gong H,Yang X,Zhao Y,Petersen RB,Liu X,Liu Y,Huang K

    更新日期:2015-01-01 00:00:00

  • Protein-protein Interactions and their Role in Various Diseases and their Prediction Techniques.

    abstract::Protein-protein interaction (PPI) is necessary for most of the biological processes and requisite for host-pathogen communication. Most of the threatening human diseases are caused by different types of interactions of proteins with their prior infected proteins or with pathogen's proteins. Understanding of involved m...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203718666170828122927

    authors: Rabbani G,Baig MH,Ahmad K,Choi I

    更新日期:2018-01-01 00:00:00

  • The role of structural flexibility and stability in the interaction of serine proteases with their inhibitors.

    abstract::Serine proteases and their natural inhibitors have long been served as excellent models for studying (primary, secondary and tertiary) structure - activity relationships of biologically interacting proteins. As protein flexibility has been accepted as a "fourth dimension" of the protein structure, its contribution to ...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203716666150429123733

    authors: Gráf L,Molnár T,Kardos J,Gáspári Z,Katona G

    更新日期:2015-01-01 00:00:00

  • Guanidinium rich peptide transporters and drug delivery.

    abstract::The use of peptide or peptidomimetic transporters to enable or enhance the uptake of drugs or probe molecules into cells and tissues has received increasing research attention and clinical interest over the past 10 years. This review summarizes a class of transporters that have been studied and focuses on the variatio...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203033487252

    authors: Wright LR,Rothbard JB,Wender PA

    更新日期:2003-04-01 00:00:00

  • Using the telobox to search for plant telomere binding proteins.

    abstract::Telobox is a Myb-related DNA-binding domain which is present in a number of yeast, plant and animal proteins. Its capacity to bind preferentially double-stranded telomeric DNA has been used in numerous studies to search for candidate telomeric proteins in various organisms, including plants. Here we provide an overvie...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920311795684968

    authors: Peška V,Schrumpfová PP,Fajkus J

    更新日期:2011-03-01 00:00:00

  • Two Elution Mechanisms of MEP Chromatography.

    abstract::MEP (mercapto-ethyl-pyridine) HyperCel is one of the hydrophobic charge induction chromatography (HCIC) resins. Under normal operation, proteins are bound to the MEP resin at neutral pH, at which MEP is not charged, mostly via hydrophobic interaction. MEP has a pyridine group, whose pK is 4.8, and hence is positively ...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203718666171117105132

    authors: Arakawa T,Tokunaga M,Maruyama T,Shiraki K

    更新日期:2019-01-01 00:00:00

  • Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

    abstract::Our understanding of the process of translation has progressed rapidly since the availability of highly resolved structures for the ribosome. A wealth of information has emerged in terms of both RNA and protein structure and the interplay between them. This has prompted us to revisit the astonishing "treasure trove" o...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203023380846

    authors: Wilson DN,Blaha G,Connell SR,Ivanov PV,Jenke H,Stelzl U,Teraoka Y,Nierhaus KH

    更新日期:2002-02-01 00:00:00

  • System Bioinformatic Approach Through Molecular Docking, Network Pharmacology and Microarray Data Analysis to Determine the Molecular Mechanism Underlying the Effects of Rehmanniae Radix Praeparata on Cardiovascular Diseases.

    abstract::Cardiovascular diseases (CVDs) are the leading cause of mortality worldwide. Rehmanniae Radix Praeparata (RRP) is a popular medicinal herb widely used in traditional Chinese medicine (TCM) to treat CVDs. However, the development of this novel therapeutic product has been stagnant, and its molecular mechanism of action...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章

    doi:10.2174/1389203720666190610161535

    authors: Zhang X,Wang D,Ren X,Atanasov AG,Zeng R,Huang L

    更新日期:2019-01-01 00:00:00

  • A review of defensins of diverse origins.

    abstract::Defensins are a family of peptides with potent antimicrobial activity. They are found in various organisms. The intent of this article is to review the structures and mechanisms of antimicrobial actions of defensins produced by different organisms including humans, other mammals, birds, reptiles, fish, mollusks, arthr...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920307782411446

    authors: Wong JH,Xia L,Ng TB

    更新日期:2007-10-01 00:00:00

  • Molecular recognition of cyclic-nucleotides and current sensors for their detection.

    abstract::This work briefly describes available sensors for cAMP and cGMP. Many sensors are based on derivatization of naturally occurring products such as immunoglobulins, protein kinases, etc. Only a few published works deal with chemosensors, which are built up by "total" chemical synthesis. This field stays opened for combi...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203053545408

    authors: Sebestík J,Hlavácek J,Stibor I

    更新日期:2005-04-01 00:00:00

  • Discovery of new therapeutic targets by the informational spectrum method.

    abstract::The field of bioinformatics has become a major part of the drug discovery pipeline playing a key role in improvement and acceleration of this time and money consuming process. Here we review the application of the informational spectrum method (ISM), a virtual spectroscopy method for structure/function analysis of pro...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920308785915245

    authors: Veljkovic N,Glisic S,Prljic J,Perovic V,Botta M,Veljkovic V

    更新日期:2008-10-01 00:00:00

  • Recent advances in QSAR and their applications in predicting the activities of chemical molecules, peptides and proteins for drug design.

    abstract::This review is to summarize three new QSAR (quantitative structure-activity relationship) methods recently developed in our group and their applications for drug design. Based on more solid theoretical models and advanced mathematical techniques, the conventional QSAR technique has been recast in the following three a...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920308784534005

    authors: Du QS,Huang RB,Chou KC

    更新日期:2008-06-01 00:00:00

  • Prediction of number and position of domain boundaries in multi-domain proteins by use of amino acid sequence alone.

    abstract::Prediction of protein domain boundaries is an important step for the prediction of three-dimensional structure. The simple method PDP has been elaborated for prediction of the number and position of domain boundaries in multi-domain proteins by use of amino acid sequence alone. The method uses an optimized scale based...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920307780363460

    authors: Dovidchenko NV,Lobanov MY,Galzitskaya OV

    更新日期:2007-04-01 00:00:00

  • Cell Penetrating Peptides: A Promising Tool for the Cellular Uptake of Macromolecular Drugs.

    abstract::The lipid bilayer of the plasma membrane is a selective impermeable barrier for the internalization of most macromolecules. Cell penetrating peptides (CPPs) could cross the plasma membrane barrier to deliver various molecules into cells and are considered as a promising tool to deliver macromolecular drugs. However, t...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203718666170710115240

    authors: Zhu P,Jin L

    更新日期:2018-01-01 00:00:00

  • Affinity Tags for Protein Purification.

    abstract::The affinity tags are unique proteins/peptides that are attached at the N- or C-terminus of the recombinant proteins. These tags help in protein purification. Additionally, some affinity tags also serve a dual purpose as solubility enhancers for challenging protein targets. By applying a combinatorial approach, carefu...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章

    doi:10.2174/1389203721666200606220109

    authors: Mishra V

    更新日期:2020-01-01 00:00:00

  • Applications and modifications of 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid (Tic) in peptides and peptidomimetics design and discovery.

    abstract::Tic, short for 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid, is a kind of unnatural α-amino acids. Due to its distinct geometrical conformation and biological activity, the structure of Tic, regarded as the surrogate of proline and the rigid analogue of phenylalanine or tyrosine, has been introduced into many comp...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920310794557691

    authors: Zhang Y,Fang H,Xu W

    更新日期:2010-12-01 00:00:00

  • The role of thiols and disulfides on protein stability.

    abstract::There has been a tremendous increase in the number of approved drugs derived from recombinant proteins; however, their development as potential drugs has been hampered by their instability that causes difficulty to formulate them as therapeutic agents. It has been shown that the reactivity of thiol and disulfide funct...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920309789630534

    authors: Trivedi MV,Laurence JS,Siahaan TJ

    更新日期:2009-12-01 00:00:00

  • Mammalian Pseudokinase TRIB3 in Normal Physiology and Disease: Charting the Progress in Old and New Avenues.

    abstract::Tribbles homolog 3 (TRIB3) is a mammalian gene that is upregulated in response to several types of cell death-inducing cellular stress. The TRIB3 protein is a pseudokinase, a protein kinase-like scaffold with impaired catalytic activity. However, research has revealed it to be prolific at forming protein- protein inte...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203718666170406124547

    authors: Ord T,Ord T

    更新日期:2017-01-01 00:00:00

  • Transcriptional mechanisms by the coregulator MAML1.

    abstract::The Mastermind-like (MAML) proteins are transcriptional coactivators for Notch signaling, an evolutionarily conserved pathway that plays several key roles in development and in human disease. The MAML family contains MAML1, MAML2, and MAML3. More recently, MAML1 has been shown to function as a coactivator for the tumo...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920309789630543

    authors: Saint Just Ribeiro M,Wallberg AE

    更新日期:2009-12-01 00:00:00

  • Regulatory Functions of Fatty Acids with Different Chain Lengths on the Intestinal Health in Pigs and Relative Signaling Pathways.

    abstract::Intestines are not only major organs for nutrient digestion and absorption, but are also the largest immune organ in pigs. They are essential for maintaining the health and growth of piglets. Fatty acids, including short-chain fatty acids, medium-chain fatty acids, and long-chain polyunsaturated fatty acids, are impor...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203720666190514120023

    authors: Chen J,Li Y,Tang Z,Sun Z

    更新日期:2019-01-01 00:00:00

  • A Systematic Prediction of Drug-Target Interactions Using Molecular Fingerprints and Protein Sequences.

    abstract:BACKGROUND:Drug-Target Interactions (DTI) play a crucial role in discovering new drug candidates and finding new proteins to target for drug development. Although the number of detected DTI obtained by high-throughput techniques has been increasing, the number of known DTI is still limited. On the other hand, the exper...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章

    doi:10.2174/1389203718666161122103057

    authors: Huang YA,You ZH,Chen X

    更新日期:2018-01-01 00:00:00

  • Angiotensin II: role in skeletal muscle atrophy.

    abstract::Skeletal muscle, the main protein reservoir in the body, is a tissue that exhibits high plasticity when exposed to changes. Muscle proteins can be mobilized into free amino acids when skeletal muscle wasting occurs, a process called skeletal muscle atrophy. This wasting is an important systemic or local manifestation ...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920312803582933

    authors: Cabello-Verrugio C,Córdova G,Salas JD

    更新日期:2012-09-01 00:00:00

  • The retinal cGMP phosphodiesterase gamma-subunit - a chameleon.

    abstract::Intrinsically disordered proteins (IDPs) represent an emerging class of proteins (or domains) that are characterized by a lack of ordered secondary and tertiary structure. This group of proteins has recently attracted tremendous interest primarily because of a unique feature: they can bind to different targets due to ...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/138920308786733930

    authors: Guo LW,Ruoho AE

    更新日期:2008-12-01 00:00:00

  • Structural Diversity in Calmodulin - Peptide Interactions.

    abstract::Calmodulin (CaM) is a highly conserved eukaryotic Ca2+ sensor protein that is able to bind a large variety of target sequences without a defined consensus sequence. The recognition of this diverse target set allows CaM to take part in the regulation of several vital cell functions. To fully understand the structural b...

    journal_title:Current protein & peptide science

    pub_type: 杂志文章,评审

    doi:10.2174/1389203720666190925101937

    authors: Dürvanger Z,Harmat V

    更新日期:2019-01-01 00:00:00