The gene mutated in autosomal recessive polycystic kidney disease encodes a large, receptor-like protein.

Abstract:

:Autosomal recessive polycystic kidney disease (ARPKD) is characterized by dilation of collecting ducts and by biliary dysgenesis and is an important cause of renal- and liver-related morbidity and mortality. Genetic analysis of a rat with recessive polycystic kidney disease revealed an orthologous relationship between the rat locus and the ARPKD region in humans; a candidate gene was identified. A mutation was characterized in the rat and screening the 66 coding exons of the human ortholog (PKHD1) in 14 probands with ARPKD revealed 6 truncating and 12 missense mutations; 8 of the affected individuals were compound heterozygotes. The PKHD1 transcript, approximately 16 kb long, is expressed in adult and fetal kidney, liver and pancreas and is predicted to encode a large novel protein, fibrocystin, with multiple copies of a domain shared with plexins and transcription factors. Fibrocystin may be a receptor protein that acts in collecting-duct and biliary differentiation.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Ward CJ,Hogan MC,Rossetti S,Walker D,Sneddon T,Wang X,Kubly V,Cunningham JM,Bacallao R,Ishibashi M,Milliner DS,Torres VE,Harris PC

doi

10.1038/ng833

keywords:

subject

Has Abstract

pub_date

2002-03-01 00:00:00

pages

259-69

issue

3

eissn

1061-4036

issn

1546-1718

pii

ng833

journal_volume

30

pub_type

杂志文章
  • A genome-wide association study identifies two new risk loci for Graves' disease.

    abstract::Graves' disease is a common autoimmune disorder characterized by thyroid stimulating hormone receptor autoantibodies (TRAb) and hyperthyroidism. To investigate the genetic architecture of Graves' disease, we conducted a genome-wide association study in 1,536 individuals with Graves' disease (cases) and 1,516 controls....

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.898

    authors: Chu X,Pan CM,Zhao SX,Liang J,Gao GQ,Zhang XM,Yuan GY,Li CG,Xue LQ,Shen M,Liu W,Xie F,Yang SY,Wang HF,Shi JY,Sun WW,Du WH,Zuo CL,Shi JX,Liu BL,Guo CC,Zhan M,Gu ZH,Zhang XN,Sun F,Wang ZQ,Song ZY,Zou CY

    更新日期:2011-08-14 00:00:00

  • New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.

    abstract::Reduced lung function predicts mortality and is key to the diagnosis of chronic obstructive pulmonary disease (COPD). In a genome-wide association study in 400,102 individuals of European ancestry, we define 279 lung function signals, 139 of which are new. In combination, these variants strongly predict COPD in indepe...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41588-018-0321-7

    authors: Shrine N,Guyatt AL,Erzurumluoglu AM,Jackson VE,Hobbs BD,Melbourne CA,Batini C,Fawcett KA,Song K,Sakornsakolpat P,Li X,Boxall R,Reeve NF,Obeidat M,Zhao JH,Wielscher M,Weiss S,Kentistou KA,Cook JP,Sun BB,Zhou J,Hu

    更新日期:2019-03-01 00:00:00

  • Polymorphisms in FKBP5 are associated with increased recurrence of depressive episodes and rapid response to antidepressant treatment.

    abstract::The stress hormone-regulating hypothalamic-pituitary-adrenal (HPA) axis has been implicated in the causality as well as the treatment of depression. To investigate a possible association between genes regulating the HPA axis and response to antidepressants and susceptibility for depression, we genotyped single-nucleot...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1479

    authors: Binder EB,Salyakina D,Lichtner P,Wochnik GM,Ising M,Pütz B,Papiol S,Seaman S,Lucae S,Kohli MA,Nickel T,Künzel HE,Fuchs B,Majer M,Pfennig A,Kern N,Brunner J,Modell S,Baghai T,Deiml T,Zill P,Bondy B,Rupprecht R

    更新日期:2004-12-01 00:00:00

  • Gains of glycosylation comprise an unexpectedly large group of pathogenic mutations.

    abstract::Mutations involving gains of glycosylation have been considered rare, and the pathogenic role of the new carbohydrate chains has never been formally established. We identified three children with mendelian susceptibility to mycobacterial disease who were homozygous with respect to a missense mutation in IFNGR2 creatin...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1581

    authors: Vogt G,Chapgier A,Yang K,Chuzhanova N,Feinberg J,Fieschi C,Boisson-Dupuis S,Alcais A,Filipe-Santos O,Bustamante J,de Beaucoudrey L,Al-Mohsen I,Al-Hajjar S,Al-Ghonaium A,Adimi P,Mirsaeidi M,Khalilzadeh S,Rosenzweig S,d

    更新日期:2005-07-01 00:00:00

  • Publisher Correction: Eggs sense high-fat diet.

    abstract::In the version of this article originally published, a box was misplaced in Fig. 1. The error has been corrected in the HTML and PDF versions of the article. ...

    journal_title:Nature genetics

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41588-018-0137-5

    authors: Leitch HG,Hajkova P

    更新日期:2018-08-01 00:00:00

  • The fecal metabolome as a functional readout of the gut microbiome.

    abstract::The human gut microbiome plays a key role in human health 1 , but 16S characterization lacks quantitative functional annotation 2 . The fecal metabolome provides a functional readout of microbial activity and can be used as an intermediate phenotype mediating host-microbiome interactions 3 . In this comprehensive desc...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0135-7

    authors: Zierer J,Jackson MA,Kastenmüller G,Mangino M,Long T,Telenti A,Mohney RP,Small KS,Bell JT,Steves CJ,Valdes AM,Spector TD,Menni C

    更新日期:2018-06-01 00:00:00

  • C-terminal truncations in human 3'-5' DNA exonuclease TREX1 cause autosomal dominant retinal vasculopathy with cerebral leukodystrophy.

    abstract::Autosomal dominant retinal vasculopathy with cerebral leukodystrophy is a microvascular endotheliopathy with middle-age onset. In nine families, we identified heterozygous C-terminal frameshift mutations in TREX1, which encodes a 3'-5' exonuclease. These truncated proteins retain exonuclease activity but lose normal p...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2082

    authors: Richards A,van den Maagdenberg AM,Jen JC,Kavanagh D,Bertram P,Spitzer D,Liszewski MK,Barilla-Labarca ML,Terwindt GM,Kasai Y,McLellan M,Grand MG,Vanmolkot KR,de Vries B,Wan J,Kane MJ,Mamsa H,Schäfer R,Stam AH,Haan J

    更新日期:2007-09-01 00:00:00

  • A role for the bacterial GATC methylome in antibiotic stress survival.

    abstract::Antibiotic resistance is an increasingly serious public health threat. Understanding pathways allowing bacteria to survive antibiotic stress may unveil new therapeutic targets. We explore the role of the bacterial epigenome in antibiotic stress survival using classical genetic tools and single-molecule real-time seque...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3530

    authors: Cohen NR,Ross CA,Jain S,Shapiro RS,Gutierrez A,Belenky P,Li H,Collins JJ

    更新日期:2016-05-01 00:00:00

  • Exome sequencing of liver fluke-associated cholangiocarcinoma.

    abstract::Opisthorchis viverrini-related cholangiocarcinoma (CCA), a fatal bile duct cancer, is a major public health concern in areas endemic for this parasite. We report here whole-exome sequencing of eight O. viverrini-related tumors and matched normal tissue. We identified and validated 206 somatic mutations in 187 genes us...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2273

    authors: Ong CK,Subimerb C,Pairojkul C,Wongkham S,Cutcutache I,Yu W,McPherson JR,Allen GE,Ng CC,Wong BH,Myint SS,Rajasegaran V,Heng HL,Gan A,Zang ZJ,Wu Y,Wu J,Lee MH,Huang D,Ong P,Chan-on W,Cao Y,Qian CN,Lim KH,Ooi

    更新日期:2012-05-06 00:00:00

  • Embryonic retinoic acid synthesis is essential for early mouse post-implantation development.

    abstract::A number of studies have suggested that the active derivative of vitamin A, retinoic acid (RA), may be important for early development of mammalian embryos. Severe vitamin A deprivation in rodents results in maternal infertility, precluding a thorough investigation of the role of RA during embryogenesis. Here we show ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/7788

    authors: Niederreither K,Subbarayan V,Dollé P,Chambon P

    更新日期:1999-04-01 00:00:00

  • Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease.

    abstract::Little is known about the genetic regulation of medulloblastoma dissemination, but metastatic medulloblastoma is highly associated with poor outcome. We obtained expression profiles of 23 primary medulloblastomas clinically designated as either metastatic (M+) or non-metastatic (M0) and identified 85 genes whose expre...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng731

    authors: MacDonald TJ,Brown KM,LaFleur B,Peterson K,Lawlor C,Chen Y,Packer RJ,Cogen P,Stephan DA

    更新日期:2001-10-01 00:00:00

  • Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.

    abstract::Measurements of erythrocytes within the blood are important clinical traits and can indicate various hematological disorders. We report here genome-wide association studies (GWAS) for six erythrocyte traits, including hemoglobin concentration (Hb), hematocrit (Hct), mean corpuscular volume (MCV), mean corpuscular hemo...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.466

    authors: Ganesh SK,Zakai NA,van Rooij FJ,Soranzo N,Smith AV,Nalls MA,Chen MH,Kottgen A,Glazer NL,Dehghan A,Kuhnel B,Aspelund T,Yang Q,Tanaka T,Jaffe A,Bis JC,Verwoert GC,Teumer A,Fox CS,Guralnik JM,Ehret GB,Rice K,Feli

    更新日期:2009-11-01 00:00:00

  • Autosomal dominant cerebellar ataxia (SCA6) associated with small polyglutamine expansions in the alpha 1A-voltage-dependent calcium channel.

    abstract::A polymorphic CAG repeat was identified in the human alpha 1A voltage-dependent calcium channel subunit. To test the hypothesis that expansion of this CAG repeat could be the cause of an inherited progressive ataxia, we genotyped a large number of unrelated controls and ataxia patients. Eight unrelated patients with l...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0197-62

    authors: Zhuchenko O,Bailey J,Bonnen P,Ashizawa T,Stockton DW,Amos C,Dobyns WB,Subramony SH,Zoghbi HY,Lee CC

    更新日期:1997-01-01 00:00:00

  • Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.

    abstract::Genetic studies of blood pressure (BP) to date have mainly analyzed common variants (minor allele frequency > 0.05). In a meta-analysis of up to ~1.3 million participants, we discovered 106 new BP-associated genomic regions and 87 rare (minor allele frequency ≤ 0.01) variant BP associations (P < 5 × 10-8), of which 32...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41588-020-00713-x

    authors: Surendran P,Feofanova EV,Lahrouchi N,Ntalla I,Karthikeyan S,Cook J,Chen L,Mifsud B,Yao C,Kraja AT,Cartwright JH,Hellwege JN,Giri A,Tragante V,Thorleifsson G,Liu DJ,Prins BP,Stewart ID,Cabrera CP,Eales JM,Akbarov A

    更新日期:2020-12-01 00:00:00

  • Loss-of-function mutations in TYROBP (DAP12) result in a presenile dementia with bone cysts.

    abstract::Polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy (PLOSL; MIM 221770), also known as Nasu-Hakola disease, is a recessively inherited disease characterized by a combination of psychotic symptoms rapidly progressing to presenile dementia and bone cysts restricted to wrists and ankles. PLOSL ha...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/77153

    authors: Paloneva J,Kestilä M,Wu J,Salminen A,Böhling T,Ruotsalainen V,Hakola P,Bakker AB,Phillips JH,Pekkarinen P,Lanier LL,Timonen T,Peltonen L

    更新日期:2000-07-01 00:00:00

  • Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus.

    abstract::Systemic lupus erythematosus (SLE, MIM152700) is an autoimmune disease characterized by self-reactive antibodies resulting in systemic inflammation and organ failure. TNFAIP3, encoding the ubiquitin-modifying enzyme A20, is an established susceptibility locus for SLE. By fine mapping and genomic re-sequencing in ethni...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.766

    authors: Adrianto I,Wen F,Templeton A,Wiley G,King JB,Lessard CJ,Bates JS,Hu Y,Kelly JA,Kaufman KM,Guthridge JM,Alarcón-Riquelme ME,BIOLUPUS and GENLES Networks.,Anaya JM,Bae SC,Bang SY,Boackle SA,Brown EE,Petri MA,Gallant C

    更新日期:2011-03-01 00:00:00

  • Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk.

    abstract::Key challenges for human genetics, precision medicine and evolutionary biology include deciphering the regulatory code of gene expression and understanding the transcriptional effects of genome variation. However, this is extremely difficult because of the enormous scale of the noncoding mutation space. We developed a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0160-6

    authors: Zhou J,Theesfeld CL,Yao K,Chen KM,Wong AK,Troyanskaya OG

    更新日期:2018-08-01 00:00:00

  • Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer.

    abstract::Many genes associated with CpG islands undergo de novo methylation in cancer. Studies have suggested that the pattern of this modification may be partially determined by an instructive mechanism that recognizes specifically marked regions of the genome. Using chromatin immunoprecipitation analysis, here we show that g...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1950

    authors: Schlesinger Y,Straussman R,Keshet I,Farkash S,Hecht M,Zimmerman J,Eden E,Yakhini Z,Ben-Shushan E,Reubinoff BE,Bergman Y,Simon I,Cedar H

    更新日期:2007-02-01 00:00:00

  • Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas.

    abstract::To compare lung adenocarcinoma (ADC) and lung squamous cell carcinoma (SqCC) and to identify new drivers of lung carcinogenesis, we examined the exome sequences and copy number profiles of 660 lung ADC and 484 lung SqCC tumor-normal pairs. Recurrent alterations in lung SqCCs were more similar to those of other squamou...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3564

    authors: Campbell JD,Alexandrov A,Kim J,Wala J,Berger AH,Pedamallu CS,Shukla SA,Guo G,Brooks AN,Murray BA,Imielinski M,Hu X,Ling S,Akbani R,Rosenberg M,Cibulskis C,Ramachandran A,Collisson EA,Kwiatkowski DJ,Lawrence MS,Wei

    更新日期:2016-06-01 00:00:00

  • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution.

    abstract::Human endogenous retroviruses (HERVs), which are remnants of past retroviral infections of the germline cells of our ancestors, make up as much as 8% of the human genome and may even outnumber genes. Most HERVs seem to have entered the genome between 10 and 50 million years ago, and they comprise over 200 distinct gro...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng775

    authors: Hughes JF,Coffin JM

    更新日期:2001-12-01 00:00:00

  • Divergent evolutionary trajectories in transplanted tumor models.

    abstract::Human-derived tumor models are becoming popular in the context of personalized medicine, but a new study shows that these models could be less representative of primary tumors than previously thought, particularly when using late passages. ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3983

    authors: Villacorta-Martin C,Craig AJ,Villanueva A

    更新日期:2017-10-27 00:00:00

  • Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.

    abstract::Overgrowth disorders are a heterogeneous group of conditions characterized by increased growth parameters and other variable clinical features such as intellectual disability and facial dysmorphism. To identify new causes of human overgrowth, we performed exome sequencing in ten proband-parent trios and detected two d...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2917

    authors: Tatton-Brown K,Seal S,Ruark E,Harmer J,Ramsay E,Del Vecchio Duarte S,Zachariou A,Hanks S,O'Brien E,Aksglaede L,Baralle D,Dabir T,Gener B,Goudie D,Homfray T,Kumar A,Pilz DT,Selicorni A,Temple IK,Van Maldergem L,Yac

    更新日期:2014-04-01 00:00:00

  • Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.

    abstract::Restless legs syndrome (RLS) is a frequent neurological disorder characterized by an imperative urge to move the legs during night, unpleasant sensation in the lower limbs, disturbed sleep and increased cardiovascular morbidity. In a genome-wide association study we found highly significant associations between RLS an...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2099

    authors: Winkelmann J,Schormair B,Lichtner P,Ripke S,Xiong L,Jalilzadeh S,Fulda S,Pütz B,Eckstein G,Hauk S,Trenkwalder C,Zimprich A,Stiasny-Kolster K,Oertel W,Bachmann CG,Paulus W,Peglau I,Eisensehr I,Montplaisir J,Turecki G

    更新日期:2007-08-01 00:00:00

  • nagie oko, encoding a MAGUK-family protein, is essential for cellular patterning of the retina.

    abstract::A layered organization of cells is a common architectural feature of many neuronal formations. Mutations of the zebrafish gene nagie oko (nok) produce a severe disruption of retinal architecture, indicating a key role for this locus in neuronal patterning. We show that nok encodes a membrane-associated guanylate kinas...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng883

    authors: Wei X,Malicki J

    更新日期:2002-06-01 00:00:00

  • Mutations in LMF1 cause combined lipase deficiency and severe hypertriglyceridemia.

    abstract::Hypertriglyceridemia is a hallmark of many disorders, including metabolic syndrome, diabetes, atherosclerosis and obesity. A well-known cause is the deficiency of lipoprotein lipase (LPL), a key enzyme in plasma triglyceride hydrolysis. Mice carrying the combined lipase deficiency (cld) mutation show severe hypertrigl...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2007.24

    authors: Péterfy M,Ben-Zeev O,Mao HZ,Weissglas-Volkov D,Aouizerat BE,Pullinger CR,Frost PH,Kane JP,Malloy MJ,Reue K,Pajukanta P,Doolittle MH

    更新日期:2007-12-01 00:00:00

  • R-spondin1 is essential in sex determination, skin differentiation and malignancy.

    abstract::R-spondins are a recently characterized small family of growth factors. Here we show that human R-spondin1 (RSPO1) is the gene disrupted in a recessive syndrome characterized by XX sex reversal, palmoplantar hyperkeratosis and predisposition to squamous cell carcinoma of the skin. Our data show, for the first time, th...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1907

    authors: Parma P,Radi O,Vidal V,Chaboissier MC,Dellambra E,Valentini S,Guerra L,Schedl A,Camerino G

    更新日期:2006-11-01 00:00:00

  • Direct detection of novel expanded trinucleotide repeats in the human genome.

    abstract::Expansion of trinucleotide repeats can give rise to genetic disease. We have developed a technique, repeat expansion detection (RED), that can identify potentially pathological repeat expansion without prior knowledge of chromosomal location. Human genomic DNA is used as a template for a two-step cycling process that ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0693-135

    authors: Schalling M,Hudson TJ,Buetow KH,Housman DE

    更新日期:1993-06-01 00:00:00

  • Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.

    abstract::Genome-wide association studies (GWAS) of longitudinal birth cohorts enable joint investigation of environmental and genetic influences on complex traits. We report GWAS results for nine quantitative metabolic traits (triglycerides, high-density lipoprotein, low-density lipoprotein, glucose, insulin, C-reactive protei...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.271

    authors: Sabatti C,Service SK,Hartikainen AL,Pouta A,Ripatti S,Brodsky J,Jones CG,Zaitlen NA,Varilo T,Kaakinen M,Sovio U,Ruokonen A,Laitinen J,Jakkula E,Coin L,Hoggart C,Collins A,Turunen H,Gabriel S,Elliot P,McCarthy MI,

    更新日期:2009-01-01 00:00:00

  • A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations.

    abstract::Congenital heart malformation (CHM) is the most common form of congenital human birth anomaly and is the leading cause of infant mortality. Although some causative genes have been identified, little progress has been made in identifying genes in which low-penetrance susceptibility variants occur in the majority of spo...

    journal_title:Nature genetics

    pub_type: 杂志文章,多中心研究

    doi:10.1038/ng.2636

    authors: Hu Z,Shi Y,Mo X,Xu J,Zhao B,Lin Y,Yang S,Xu Z,Dai J,Pan S,Da M,Wang X,Qian B,Wen Y,Wen J,Xing J,Guo X,Xia Y,Ma H,Jin G,Yu S,Liu J,Zhou Z,Wang X,Chen Y,Sha J,Shen H

    更新日期:2013-07-01 00:00:00

  • Mutation of NLRC4 causes a syndrome of enterocolitis and autoinflammation.

    abstract::Upon detection of pathogen-associated molecular patterns, innate immune receptors initiate inflammatory responses. These receptors include cytoplasmic NOD-like receptors (NLRs) whose stimulation recruits and proteolytically activates caspase-1 within the inflammasome, a multiprotein complex. Caspase-1 mediates the pro...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3066

    authors: Romberg N,Al Moussawi K,Nelson-Williams C,Stiegler AL,Loring E,Choi M,Overton J,Meffre E,Khokha MK,Huttner AJ,West B,Podoltsev NA,Boggon TJ,Kazmierczak BI,Lifton RP

    更新日期:2014-10-01 00:00:00