Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8.

Abstract:

:We report here the crystal structure of the RuvB motor protein from Thermus thermophilus HB8, which drives branch migration of the Holliday junction during homologous recombination. RuvB has a crescent-like architecture consisting of three consecutive domains, the first two of which are involved in ATP binding and hydrolysis. DNA is likely to interact with a large basic cleft, which encompasses the ATP-binding pocket and domain boundaries, whereas the junction-recognition protein RuvA may bind a flexible beta-hairpin protruding from the N-terminal domain. The structures of two subunits, related by a noncrystallographic pseudo-2-fold axis, imply that conformational changes of motor protein coupled with ATP hydrolysis may reflect motility essential for its translocation around double-stranded DNA.

authors

Yamada K,Kunishima N,Mayanagi K,Ohnishi T,Nishino T,Iwasaki H,Shinagawa H,Morikawa K

doi

10.1073/pnas.031470598

keywords:

subject

Has Abstract

pub_date

2001-02-13 00:00:00

pages

1442-7

issue

4

eissn

0027-8424

issn

1091-6490

pii

031470598

journal_volume

98

pub_type

杂志文章
  • Skin test to assess virus-specific cytotoxic T-cell activity.

    abstract::A way to assess specific CD8+ T-cell activity in a skin test analogous to the conventional delayed-type hypersensitivity (DTH) reaction for CD4+ T cells is presented. Local injection of viral class I binding peptides caused a specific CD8+ T-cell-mediated DTH in footpads of virally infected mice. The DTH was inducible...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.16.7757

    authors: Kündig TM,Althage A,Hengartner H,Zinkernagel RM

    更新日期:1992-08-15 00:00:00

  • Insertion and turnover of macrophage plasma membrane proteins.

    abstract::The composition, insertion, and turnover of externally disposed proteins on the macrophage plasma membrane were analyzed. Cells labeled with [35S]methionine were incubated with the nonpermeant reagent trinitrobenzene sulfonic acid to introduce the trinitrophenyl moiety on free amino groups of externally oriented membr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.76.8.3824

    authors: Kaplan G,Unkeless JC,Cohn ZA

    更新日期:1979-08-01 00:00:00

  • Local molecular field theory for effective attractions between like charged objects in systems with strong Coulomb interactions.

    abstract::Strong, short-ranged positional correlations involving counterions can induce a net attractive force between negatively charged strands of DNA and lead to the formation of ion pairs in dilute ionic solutions. However, the long range of the Coulomb interactions impedes the development of a simple local picture. We addr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0600282103

    authors: Chen YG,Weeks JD

    更新日期:2006-05-16 00:00:00

  • On the mechanism of action of aldosterone.

    abstract::Studies to elucidate the mode of action of aldosterone have been carried out in the amphibian urinary bladder. The following previously reported hypotheses were evaluated: (1) aldosterone stimulates sodium transport by increasing the amount of sodium available to the sodium pump; (2) aldosterone enhances energy produc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.64.1.330

    authors: Goodman DB,Allen JE,Rasmussen H

    更新日期:1969-09-01 00:00:00

  • Enhancement of protein expression by alphavirus replicons by designing self-replicating subgenomic RNAs.

    abstract::Since the development of infectious cDNA clones of viral RNA genomes and the means of delivery of the in vitro-synthesized RNA into cells, alphaviruses have become an attractive system for expression of heterologous genetic information. Alphaviruses replicate exclusively in the cytoplasm, and their genetic material ca...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1408677111

    authors: Kim DY,Atasheva S,McAuley AJ,Plante JA,Frolova EI,Beasley DW,Frolov I

    更新日期:2014-07-22 00:00:00

  • Capturing native long-range contiguity by in situ library construction and optical sequencing.

    abstract::The relatively short read lengths associated with the most cost-effective DNA sequencing technologies have limited their use in de novo genome assembly, structural variation detection, and haplotype-resolved genome sequencing. Consequently, there is a strong need for methods that capture various scales of contiguity i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1202680109

    authors: Schwartz JJ,Lee C,Hiatt JB,Adey A,Shendure J

    更新日期:2012-11-13 00:00:00

  • Quantifying and mapping the human appropriation of net primary production in earth's terrestrial ecosystems.

    abstract::Human appropriation of net primary production (HANPP), the aggregate impact of land use on biomass available each year in ecosystems, is a prominent measure of the human domination of the biosphere. We present a comprehensive assessment of global HANPP based on vegetation modeling, agricultural and forestry statistics...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0704243104

    authors: Haberl H,Erb KH,Krausmann F,Gaube V,Bondeau A,Plutzar C,Gingrich S,Lucht W,Fischer-Kowalski M

    更新日期:2007-07-31 00:00:00

  • Isolation and induction of erythroleukemic cell lines with properties of erythroid progenitor burst-forming cell (BFU-E) and erythroid precursor cell (CFU-E).

    abstract::We isolated erythroleukemic cell lines arrested at different levels of the erythroid differentiation pathway. One cell line (CB5), established from mice infected with the helper-independent Friend murine leukemia virus (F-MuLV), exhibited properties similar to those of the normal erythroid progenitor burst-forming cel...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.12.3721

    authors: Shibuya T,Mak TW

    更新日期:1983-06-01 00:00:00

  • Further comments on the ascorbic acid requirement.

    abstract::Recommended Daily Allowances (US RDA) of the Food and Drug Administration for ascorbic acid are higher than Recommended Dietary Allowances (set by the Food and Nutrition Board) for adults. There is a 6-fold margin between the requirement to prevent scurvy and the US RDA. The high requirement reported for the rhesus mo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.72.10.4151

    authors: Jukes TH

    更新日期:1975-10-01 00:00:00

  • End-binding proteins sensitize microtubules to the action of microtubule-targeting agents.

    abstract::Microtubule-targeting agents (MTAs) are widely used for treatment of cancer and other diseases, and a detailed understanding of the mechanism of their action is important for the development of improved microtubule-directed therapies. Although there is a large body of data on the interactions of different MTAs with pu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1300395110

    authors: Mohan R,Katrukha EA,Doodhi H,Smal I,Meijering E,Kapitein LC,Steinmetz MO,Akhmanova A

    更新日期:2013-05-28 00:00:00

  • Quantifying uncertainty in climate change science through empirical information theory.

    abstract::Quantifying the uncertainty for the present climate and the predictions of climate change in the suite of imperfect Atmosphere Ocean Science (AOS) computer models is a central issue in climate change science. Here, a systematic approach to these issues with firm mathematical underpinning is developed through empirical...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1007009107

    authors: Majda AJ,Gershgorin B

    更新日期:2010-08-24 00:00:00

  • Echo-delay resolution in sonar images of the big brown bat, Eptesicus fuscus.

    abstract::Echolocating big brown bats (Eptesicus fuscus) broadcast ultrasonic frequency-modulated (FM) biosonar sounds (20-100 kHz frequencies; 10-50 microseconds periods) and perceive target range from echo delay. Knowing the acuity for delay resolution is essential to understand how bats process echoes because they perceive t...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.21.12647

    authors: Simmons JA,Ferragamo MJ,Moss CF

    更新日期:1998-10-13 00:00:00

  • Papillomavirus sequences integrate near cellular oncogenes in some cervical carcinomas.

    abstract::The chromosomal locations of cellular sequences flanking integrated papillomavirus DNA in four cervical carcinoma cell lines and a primary cervical carcinoma have been determined. The two human papillomavirus (HPV) 16 flanking sequences derived from the tumor were localized to chromosome regions 20pter----20q13 and 3p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.4.1070

    authors: Dürst M,Croce CM,Gissmann L,Schwarz E,Huebner K

    更新日期:1987-02-01 00:00:00

  • Nuclease protection analysis of ribonucleoprotein complexes: use of the cytotoxic ribonuclease alpha-sarcin to determine the binding sites for Escherichia coli ribosomal proteins L5, L18, and L25 on 5S rRNA.

    abstract::A rapid and convenient method has been devised to determine the binding sites for proteins on RNA. The procedure is an adaptation of one used to map DNA-protein complexes by protection against nuclease digestion. The method uses the cytotoxic ribonuclease alpha-sarcin, which hydrolyzes purines in both single- and doub...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.2.322

    authors: Huber PW,Wool IG

    更新日期:1984-01-01 00:00:00

  • Cloning and sequencing of liver cDNA coding for bovine protein C.

    abstract::cDNA coding for protein C has been cloned from a bovine liver library in plasmid vector pBR322 and its sequence has been determined. Two overlapping clones code for the entire light and heavy chains of the mature protein, as well as a previously unreported connecting dipeptide (Lys-Arg) and a 39-amino acid leader pept...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.18.5653

    authors: Long GL,Belagaje RM,MacGillivray RT

    更新日期:1984-09-01 00:00:00

  • Photophosphorylation by monomolecular films at an air-water interface.

    abstract::An acetone extract of chloroplast particles, when layered on an aqueous surface, exhibited light-dependent phosphorylation. Studies with the firefly-tail enzyme assay, as well as with (32)P-labeled inorganic phosphate, show an initial release of adenosine triphosphate (a step that is apparently only light-triggered), ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.70.1.50

    authors: McPhee J,Brody SS

    更新日期:1973-01-01 00:00:00

  • Protacs: chimeric molecules that target proteins to the Skp1-Cullin-F box complex for ubiquitination and degradation.

    abstract::The intracellular levels of many proteins are regulated by ubiquitin-dependent proteolysis. One of the best-characterized enzymes that catalyzes the attachment of ubiquitin to proteins is a ubiquitin ligase complex, Skp1-Cullin-F box complex containing Hrt1 (SCF). We sought to artificially target a protein to the SCF ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.141230798

    authors: Sakamoto KM,Kim KB,Kumagai A,Mercurio F,Crews CM,Deshaies RJ

    更新日期:2001-07-17 00:00:00

  • A target essential for the activity of a nonacidic yeast transcriptional activator.

    abstract::P201 is a short (eight-residue) nonacidic peptide that comprises a strong transcriptional activating region when tethered to DNA in yeast. Here we identify the mediator protein Gal11 as an essential target of P201. Deletion of Gal11, which modestly decreases activation elicited by the typical acidic yeast activator, a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.092263499

    authors: Lu Z,Ansari AZ,Lu X,Ogirala A,Ptashne M

    更新日期:2002-06-25 00:00:00

  • p75 neurotrophin receptor regulates glucose homeostasis and insulin sensitivity.

    abstract::Insulin resistance is a key factor in the etiology of type 2 diabetes. Insulin-stimulated glucose uptake is mediated by the glucose transporter 4 (GLUT4), which is expressed mainly in skeletal muscle and adipose tissue. Insulin-stimulated translocation of GLUT4 from its intracellular compartment to the plasma membrane...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1103638109

    authors: Baeza-Raja B,Li P,Le Moan N,Sachs BD,Schachtrup C,Davalos D,Vagena E,Bridges D,Kim C,Saltiel AR,Olefsky JM,Akassoglou K

    更新日期:2012-04-10 00:00:00

  • Toward development of a screen to identify randomly encoded, foldable sequences.

    abstract::The ability to identify sequences in a randomly encoded polypeptide library that are capable of acquiring unique and stably folded structures would be valuable in the examination of protein-folding issues. The quality control system of the yeast secretory pathway prevents the release of incompletely folded polypeptide...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.102172099

    authors: Hagihara Y,Kim PS

    更新日期:2002-05-14 00:00:00

  • Autophagy-mediated reentry of Francisella tularensis into the endocytic compartment after cytoplasmic replication.

    abstract::Intracellular bacterial pathogens evade the bactericidal functions of mammalian cells by physical escape from their phagosome and replication into the cytoplasm or through the modulation of phagosome maturation and biogenesis of a membrane-bound replicative organelle. Here, we detail in murine primary macrophages the ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0601838103

    authors: Checroun C,Wehrly TD,Fischer ER,Hayes SF,Celli J

    更新日期:2006-09-26 00:00:00

  • Recombination involving transposable elements: role of target molecule replication in Tn1 delta Ap-mediated replicon fusion.

    abstract::Donor DNA molecules carrying Tn1 or Tn3 deletion mutants do not need to replicate in order to participate in replicon fusion recombination events during which the Tn1/Tn3 element is duplicated. We have assayed Tn1 delta Ap-mediated replicon fusion events involving plasmid R388 and the bacteriophage lambda-derived plas...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.8.2314

    authors: Muster CJ,Shapiro JA,MacHattie LA

    更新日期:1983-04-01 00:00:00

  • An information theory model of hydrophobic interactions.

    abstract::A molecular model of poorly understood hydrophobic effects is heuristically developed using the methods of information theory. Because primitive hydrophobic effects can be tied to the probability of observing a molecular-sized cavity in the solvent, the probability distribution of the number of solvent centers in a ca...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.17.8951

    authors: Hummer G,Garde S,García AE,Pohorille A,Pratt LR

    更新日期:1996-08-20 00:00:00

  • Binding properties of a cell adhesion molecule from neural tissue.

    abstract::We have previously identified and purified a cell surface glycoprotein from retina and brain, called neural cell adhesion molecule or N-CAM, that appears to be involved in neural cell--cell adhesion, the fasciculation of neurites, and the formation of normal tissue patterns in the retina. The present studies reveal th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.79.2.685

    authors: Rutishauser U,Hoffman S,Edelman GM

    更新日期:1982-01-01 00:00:00

  • Hydrogen peroxide-mediated neuronal cell death induced by an endogenous neurotoxin, 3-hydroxykynurenine.

    abstract::3-Hydroxykynurenine (3-HK) is a tryptophan metabolite whose level in the brain is markedly elevated under several pathological conditions, including Huntington disease and human immunodeficiency virus infection. Here we demonstrate that micromolar concentrations (1-100 microM) of 3-HK cause cell death in primary neuro...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.22.12553

    authors: Okuda S,Nishiyama N,Saito H,Katsuki H

    更新日期:1996-10-29 00:00:00

  • Cloning of a human complement component C4 gene.

    abstract::Six overlapping cosmid clones having an average insert size of 40 kilobase pairs were identified and isolated from a human genomic library by using a cDNA probe, Alu-7, specific for the amino acid sequence of C4d, a known region of the fourth component of human complement. Analysis of these genomic clones by restricti...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.1.264

    authors: Carroll MC,Porter RR

    更新日期:1983-01-01 00:00:00

  • Human and rat mast cell high-affinity immunoglobulin E receptors: characterization of putative alpha-chain gene products.

    abstract::We have cloned and determined the entire nucleotide sequence of cDNAs corresponding to the putative alpha subunits of the human and rat mast cell high-affinity IgE receptors. Both human and rat cDNAs encode an NH2-terminal signal peptide, two immunoglobulin-like extracellular domains (encoded by discrete exons), a hyd...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.6.1907

    authors: Shimizu A,Tepler I,Benfey PN,Berenstein EH,Siraganian RP,Leder P

    更新日期:1988-03-01 00:00:00

  • Structure and function in rhodopsin: asymmetric reconstitution of rhodopsin in liposomes.

    abstract::We report on preparation of rhodopsin proteoliposomes with the cytoplasmic domain of rhodopsin facing the exterior of the proteoliposomes. Rhodopsin purified from rod outer segments of bovine retinae by immunoaffinity chromatography in octyl glucoside was reconstituted into liposomes prepared from soybean phospholipid...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.212518899

    authors: Niu L,Kim JM,Khorana HG

    更新日期:2002-10-15 00:00:00

  • CAMSAP3 facilitates basal body polarity and the formation of the central pair of microtubules in motile cilia.

    abstract::Synchronized beating of cilia on multiciliated cells (MCCs) generates a directional flow of mucus across epithelia. This motility requires a "9 + 2" microtubule (MT) configuration in axonemes and the unidirectional array of basal bodies of cilia on the MCCs. However, it is not fully understood what components are need...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1907335117

    authors: Robinson AM,Takahashi S,Brotslaw EJ,Ahmad A,Ferrer E,Procissi D,Richter CP,Cheatham MA,Mitchell BJ,Zheng J

    更新日期:2020-06-16 00:00:00

  • Disruption of TRPM6/TRPM7 complex formation by a mutation in the TRPM6 gene causes hypomagnesemia with secondary hypocalcemia.

    abstract::Impaired magnesium reabsorption in patients with TRPM6 gene mutations stresses an important role of TRPM6 (melastatin-related TRP cation channel) in epithelial magnesium transport. While attempting to isolate full-length TRPM6, we found that the human TRPM6 gene encodes multiple mRNA isoforms. Full-length TRPM6 varian...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0305252101

    authors: Chubanov V,Waldegger S,Mederos y Schnitzler M,Vitzthum H,Sassen MC,Seyberth HW,Konrad M,Gudermann T

    更新日期:2004-03-02 00:00:00