The pallid gene encodes a novel, syntaxin 13-interacting protein involved in platelet storage pool deficiency.

Abstract:

:Pallid (pa) is 1 of 13 platelet storage pool deficiency (SPD) mouse mutants. pa animals suffer from prolonged bleeding time, pigment dilution, kidney lysosomal enzyme elevation, serum alpha1-antitrypsin activity deficiency and abnormal otolith formation. As with other mouse mutants of this class, characterization of pa mice suggests a defect in organelle biosynthesis. Here we describe the physical mapping, positional cloning, and mutational and functional analysis of the gene that is defective in pa mice. It encodes a ubiquitously expressed, highly charged 172-amino-acid protein (termed pallidin) with no homology to known proteins. We detected a nonsense mutation at codon 69 of this gene in the pallid mutant. In a yeast two-hybrid screen, we discovered that pallidin interacts with syntaxin 13, a t-SNARE protein that mediates vesicle-docking and fusion. We confirmed this interaction by co-immunoprecipitation assay. Immunofluorescence studies corroborate that the cellular distribution of pallidin overlaps that of syntaxin 13. Whereas the mocha and pearl SPD mutants have defects in Ap-3, our findings suggest that pa SPD mutants are defective in a more downstream event of vesicle-trafficking: namely, vesicle-docking and fusion.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Huang L,Kuo YM,Gitschier J

doi

10.1038/15507

keywords:

subject

Has Abstract

pub_date

1999-11-01 00:00:00

pages

329-32

issue

3

eissn

1061-4036

issn

1546-1718

journal_volume

23

pub_type

杂志文章
  • SMC1beta-deficient female mice provide evidence that cohesins are a missing link in age-related nondisjunction.

    abstract::Mitotic chromosome segregation is facilitated by the cohesin complex, which maintains physical connections between sister chromatids until anaphase. Meiotic cell division is considerably more complex, as cohesion must be released sequentially to facilitate orderly segregation of chromosomes at both meiosis I and meios...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1672

    authors: Hodges CA,Revenkova E,Jessberger R,Hassold TJ,Hunt PA

    更新日期:2005-12-01 00:00:00

  • A genome-wide search for chromosomal loci linked to bipolar affective disorder in the Old Order Amish.

    abstract::The most characteristic features of bipolar affective disorder (manic-depressive illness) are episodes of mania (bipolar I, BPI) or hypomania (bipolar II, BPII) interspersed with periods of depression. Manic-depressive illness afflicts about one percent of the population, and if untreated, is associated with an approx...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0496-431

    authors: Ginns EI,Ott J,Egeland JA,Allen CR,Fann CS,Pauls DL,Weissenbachoff J,Carulli JP,Falls KM,Keith TP,Paul SM

    更新日期:1996-04-01 00:00:00

  • Additional SNPs and linkage-disequilibrium analyses are necessary for whole-genome association studies in humans.

    abstract::More than 5 million single-nucleotide polymorphisms (SNPs) with minor-allele frequency greater than 10% are expected to exist in the human genome. Some of these SNPs may be associated with risk of developing common diseases. To assess the power of currently available SNPs to detect such associations, we resequenced 50...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1128

    authors: Carlson CS,Eberle MA,Rieder MJ,Smith JD,Kruglyak L,Nickerson DA

    更新日期:2003-04-01 00:00:00

  • A mutation in the mucosal keratin K4 is associated with oral white sponge nevus.

    abstract::White sponge nevus (WSN) is a benign autosomal dominant disorder which affects non-cornifying stratified squamous epithelia (MIM 193900) (ref. 1). Phenotypically it presents as white 'spongy' plaques (oral leukokeratoses), most commonly in the mouth but also reported in the esophagus and anogenital mucosa. Histologica...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1295-450

    authors: Rugg EL,McLean WH,Allison WE,Lunny DP,Macleod RI,Felix DH,Lane EB,Munro CS

    更新日期:1995-12-01 00:00:00

  • Genomic features of bacterial adaptation to plants.

    abstract::Plants intimately associate with diverse bacteria. Plant-associated bacteria have ostensibly evolved genes that enable them to adapt to plant environments. However, the identities of such genes are mostly unknown, and their functions are poorly characterized. We sequenced 484 genomes of bacterial isolates from roots o...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-017-0012-9

    authors: Levy A,Salas Gonzalez I,Mittelviefhaus M,Clingenpeel S,Herrera Paredes S,Miao J,Wang K,Devescovi G,Stillman K,Monteiro F,Rangel Alvarez B,Lundberg DS,Lu TY,Lebeis S,Jin Z,McDonald M,Klein AP,Feltcher ME,Rio TG,Grant

    更新日期:2017-12-18 00:00:00

  • Mutations in UVSSA cause UV-sensitive syndrome and impair RNA polymerase IIo processing in transcription-coupled nucleotide-excision repair.

    abstract::UV-sensitive syndrome (UV(S)S) is a genodermatosis characterized by cutaneous photosensitivity without skin carcinoma. Despite mild clinical features, cells from individuals with UV(S)S, like Cockayne syndrome cells, are very UV sensitive and are deficient in transcription-coupled nucleotide-excision repair (TC-NER), ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2229

    authors: Nakazawa Y,Sasaki K,Mitsutake N,Matsuse M,Shimada M,Nardo T,Takahashi Y,Ohyama K,Ito K,Mishima H,Nomura M,Kinoshita A,Ono S,Takenaka K,Masuyama R,Kudo T,Slor H,Utani A,Tateishi S,Yamashita S,Stefanini M,Lehmann

    更新日期:2012-05-01 00:00:00

  • Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.

    abstract::Genome-wide association studies (GWAS) of longitudinal birth cohorts enable joint investigation of environmental and genetic influences on complex traits. We report GWAS results for nine quantitative metabolic traits (triglycerides, high-density lipoprotein, low-density lipoprotein, glucose, insulin, C-reactive protei...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.271

    authors: Sabatti C,Service SK,Hartikainen AL,Pouta A,Ripatti S,Brodsky J,Jones CG,Zaitlen NA,Varilo T,Kaakinen M,Sovio U,Ruokonen A,Laitinen J,Jakkula E,Coin L,Hoggart C,Collins A,Turunen H,Gabriel S,Elliot P,McCarthy MI,

    更新日期:2009-01-01 00:00:00

  • nagie oko, encoding a MAGUK-family protein, is essential for cellular patterning of the retina.

    abstract::A layered organization of cells is a common architectural feature of many neuronal formations. Mutations of the zebrafish gene nagie oko (nok) produce a severe disruption of retinal architecture, indicating a key role for this locus in neuronal patterning. We show that nok encodes a membrane-associated guanylate kinas...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng883

    authors: Wei X,Malicki J

    更新日期:2002-06-01 00:00:00

  • Embryonic retinoic acid synthesis is essential for early mouse post-implantation development.

    abstract::A number of studies have suggested that the active derivative of vitamin A, retinoic acid (RA), may be important for early development of mammalian embryos. Severe vitamin A deprivation in rodents results in maternal infertility, precluding a thorough investigation of the role of RA during embryogenesis. Here we show ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/7788

    authors: Niederreither K,Subbarayan V,Dollé P,Chambon P

    更新日期:1999-04-01 00:00:00

  • Systematic assessment of copy number variant detection via genome-wide SNP genotyping.

    abstract::SNP genotyping has emerged as a technology to incorporate copy number variants (CNVs) into genetic analyses of human traits. However, the extent to which SNP platforms accurately capture CNVs remains unclear. Using independent, sequence-based CNV maps, we find that commonly used SNP platforms have limited or no probe ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.236

    authors: Cooper GM,Zerr T,Kidd JM,Eichler EE,Nickerson DA

    更新日期:2008-10-01 00:00:00

  • GARFIELD classifies disease-relevant genomic features through integration of functional annotations with association signals.

    abstract::Loci discovered by genome-wide association studies predominantly map outside protein-coding genes. The interpretation of the functional consequences of non-coding variants can be greatly enhanced by catalogs of regulatory genomic regions in cell lines and primary tissues. However, robust and readily applicable methods...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0322-6

    authors: Iotchkova V,Ritchie GRS,Geihs M,Morganella S,Min JL,Walter K,Timpson NJ,UK10K Consortium.,Dunham I,Birney E,Soranzo N

    更新日期:2019-02-01 00:00:00

  • Enhancer mutations and phenotype modularity.

    abstract::Only a few mutations in regulatory elements that cause human disease have been identified thus far. A new report identifies cis-regulatory mutations that abolish the activity of a developmental enhancer, thereby causing pancreatic agenesis. ...

    journal_title:Nature genetics

    pub_type: 评论,新闻

    doi:10.1038/ng.2861

    authors: Gordon CT,Lyonnet S

    更新日期:2014-01-01 00:00:00

  • A taste of pineapple evolution through genome sequencing.

    abstract::The genome sequence assembly of the highly heterozygous Ananas comosus and its varieties is an impressive technical achievement. The sequence opens the door to a greater understanding of pineapple morphology and evolution. ...

    journal_title:Nature genetics

    pub_type: 评论,杂志文章

    doi:10.1038/ng.3450

    authors: Xu Q,Liu ZJ

    更新日期:2015-12-01 00:00:00

  • Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.

    abstract::Measurements of erythrocytes within the blood are important clinical traits and can indicate various hematological disorders. We report here genome-wide association studies (GWAS) for six erythrocyte traits, including hemoglobin concentration (Hb), hematocrit (Hct), mean corpuscular volume (MCV), mean corpuscular hemo...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.466

    authors: Ganesh SK,Zakai NA,van Rooij FJ,Soranzo N,Smith AV,Nalls MA,Chen MH,Kottgen A,Glazer NL,Dehghan A,Kuhnel B,Aspelund T,Yang Q,Tanaka T,Jaffe A,Bis JC,Verwoert GC,Teumer A,Fox CS,Guralnik JM,Ehret GB,Rice K,Feli

    更新日期:2009-11-01 00:00:00

  • Probabilistic fine-mapping of transcriptome-wide association studies.

    abstract::Transcriptome-wide association studies using predicted expression have identified thousands of genes whose locally regulated expression is associated with complex traits and diseases. In this work, we show that linkage disequilibrium induces significant gene-trait associations at non-causal genes as a function of the ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-019-0367-1

    authors: Mancuso N,Freund MK,Johnson R,Shi H,Kichaev G,Gusev A,Pasaniuc B

    更新日期:2019-04-01 00:00:00

  • Extensive allelic variation and ultrashort telomeres in senescent human cells.

    abstract::By imposing a limit on the proliferative lifespan of most somatic cells, telomere erosion represents an innate mechanism for tumor suppression and may contribute to age-related disease. A detailed understanding of the pathways that link shortened telomeres to replicative senescence has been severely hindered by the in...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1084

    authors: Baird DM,Rowson J,Wynford-Thomas D,Kipling D

    更新日期:2003-02-01 00:00:00

  • The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.

    abstract::Several attributes intuitively considered to be typical mammalian features, such as complex behavior, live birth and malignant disease such as cancer, also appeared several times independently in lower vertebrates. The genetic mechanisms underlying the evolution of these elaborate traits are poorly understood. The pla...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2604

    authors: Schartl M,Walter RB,Shen Y,Garcia T,Catchen J,Amores A,Braasch I,Chalopin D,Volff JN,Lesch KP,Bisazza A,Minx P,Hillier L,Wilson RK,Fuerstenberg S,Boore J,Searle S,Postlethwait JH,Warren WC

    更新日期:2013-05-01 00:00:00

  • Loss of the Alox5 gene impairs leukemia stem cells and prevents chronic myeloid leukemia.

    abstract::Targeting of cancer stem cells is believed to be essential for curative therapy of cancers, but supporting evidence is limited. Few selective target genes in cancer stem cells have been identified. Here we identify the arachidonate 5-lipoxygenase (5-LO) gene (Alox5) as a critical regulator for leukemia stem cells (LSC...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.389

    authors: Chen Y,Hu Y,Zhang H,Peng C,Li S

    更新日期:2009-07-01 00:00:00

  • KLHL3 mutations cause familial hyperkalemic hypertension by impairing ion transport in the distal nephron.

    abstract::Familial hyperkalemic hypertension (FHHt) is a Mendelian form of arterial hypertension that is partially explained by mutations in WNK1 and WNK4 that lead to increased activity of the Na(+)-Cl(-) cotransporter (NCC) in the distal nephron. Using combined linkage analysis and whole-exome sequencing in two families, we i...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2218

    authors: Louis-Dit-Picard H,Barc J,Trujillano D,Miserey-Lenkei S,Bouatia-Naji N,Pylypenko O,Beaurain G,Bonnefond A,Sand O,Simian C,Vidal-Petiot E,Soukaseum C,Mandet C,Broux F,Chabre O,Delahousse M,Esnault V,Fiquet B,Houillier

    更新日期:2012-03-11 00:00:00

  • Identification of the gene that, when mutated, causes the human obesity syndrome BBS4.

    abstract::Bardet-Biedl syndrome (BBS, MIM 209900) is a heterogeneous autosomal recessive disorder characterized by obesity, pigmentary retinopathy, polydactyly, renal malformations, mental retardation, and hypogenitalism. The disorder is also associated with diabetes mellitus, hypertension, and congenital heart disease. Six dis...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/88925

    authors: Mykytyn K,Braun T,Carmi R,Haider NB,Searby CC,Shastri M,Beck G,Wright AF,Iannaccone A,Elbedour K,Riise R,Baldi A,Raas-Rothschild A,Gorman SW,Duhl DM,Jacobson SG,Casavant T,Stone EM,Sheffield VC

    更新日期:2001-06-01 00:00:00

  • Early TP53 alterations engage environmental exposures to promote gastric premalignancy in an integrative mouse model.

    abstract::Somatic alterations in cancer genes are being detected in normal and premalignant tissue, thus placing greater emphasis on gene-environment interactions that enable disease phenotypes. By combining early genetic alterations with disease-relevant exposures, we developed an integrative mouse model to study gastric prema...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-019-0574-9

    authors: Sethi NS,Kikuchi O,Duronio GN,Stachler MD,McFarland JM,Ferrer-Luna R,Zhang Y,Bao C,Bronson R,Patil D,Sanchez-Vega F,Liu JB,Sicinska E,Lazaro JB,Ligon KL,Beroukhim R,Bass AJ

    更新日期:2020-02-01 00:00:00

  • Molecular breeding of viruses.

    abstract::Genetic recombination is a major force driving the evolution of many viruses. Recombination between two copackaged retroviral genomes may occur at rates as high as 40% per replication cycle. This enables genetic information to be shuffled rapidly, leading to recombinants with new patterns of mutations and phenotypes. ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/78132

    authors: Soong NW,Nomura L,Pekrun K,Reed M,Sheppard L,Dawes G,Stemmer WP

    更新日期:2000-08-01 00:00:00

  • The complete BRCA2 gene and mutations in chromosome 13q-linked kindreds.

    abstract::Breast carcinoma is the most common malignancy among women in developed countries. Because family history remains the strongest single predictor of breast cancer risk, attention has focused on the role of highly penetrant, dominantly inherited genes in cancer-prone kindreds (1). BRCA1 was localized to chromosome 17 th...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0396-333

    authors: Tavtigian SV,Simard J,Rommens J,Couch F,Shattuck-Eidens D,Neuhausen S,Merajver S,Thorlacius S,Offit K,Stoppa-Lyonnet D,Belanger C,Bell R,Berry S,Bogden R,Chen Q,Davis T,Dumont M,Frye C,Hattier T,Jammulapati S,Jane

    更新日期:1996-03-01 00:00:00

  • ISPD loss-of-function mutations disrupt dystroglycan O-mannosylation and cause Walker-Warburg syndrome.

    abstract::Walker-Warburg syndrome (WWS) is clinically defined as congenital muscular dystrophy that is accompanied by a variety of brain and eye malformations. It represents the most severe clinical phenotype in a spectrum of diseases associated with abnormal post-translational processing of a-dystroglycan that share a defect i...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2252

    authors: Willer T,Lee H,Lommel M,Yoshida-Moriguchi T,de Bernabe DB,Venzke D,Cirak S,Schachter H,Vajsar J,Voit T,Muntoni F,Loder AS,Dobyns WB,Winder TL,Strahl S,Mathews KD,Nelson SF,Moore SA,Campbell KP

    更新日期:2012-05-01 00:00:00

  • An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequences.

    abstract::Here we ask the question "How much information do epigenomic datasets provide about human genomic function?" We consider nine epigenomic features across 115 cell types and measure information about function as a reduction in entropy under a probabilistic evolutionary model fitted to human and nonhuman primate genomes....

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0300-z

    authors: Gulko B,Siepel A

    更新日期:2019-02-01 00:00:00

  • Isolation of chromosome 21-specific yeast artificial chromosomes from a total human genome library.

    abstract::A new approach for the isolation of chromosome-specific subsets from a human genomic yeast artificial chromosome (YAC) library is described. It is based on the hybridization with an Alu polymerase chain reaction (PCR) probe. We screened a 1.5 genome equivalent YAC library of megabase insert size with Alu PCR products ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0692-222

    authors: Chumakov IM,Le Gall I,Billault A,Ougen P,Soularue P,Guillou S,Rigault P,Bui H,De Tand MF,Barillot E

    更新日期:1992-06-01 00:00:00

  • Choose your target.

    abstract::The technology of modifying endogenous genes has recently been extended from mice to Drosophila and sheep. Concurrently, genomic sequencing is uncovering thousands of previously uncharacterized genes. Armed with today's technologies, what are our best options for delineating the functions of these new genes? ...

    journal_title:Nature genetics

    pub_type: 杂志文章,评审

    doi:10.1038/82825

    authors: Capecchi MR

    更新日期:2000-10-01 00:00:00

  • Frequent somatic mutations in MAP3K5 and MAP3K9 in metastatic melanoma identified by exome sequencing.

    abstract::We sequenced eight melanoma exomes to identify new somatic mutations in metastatic melanoma. Focusing on the mitogen-activated protein (MAP) kinase kinase kinase (MAP3K) family, we found that 24% of melanoma cell lines have mutations in the protein-coding regions of either MAP3K5 or MAP3K9. Structural modeling predict...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.1041

    authors: Stark MS,Woods SL,Gartside MG,Bonazzi VF,Dutton-Regester K,Aoude LG,Chow D,Sereduk C,Niemi NM,Tang N,Ellis JJ,Reid J,Zismann V,Tyagi S,Muzny D,Newsham I,Wu Y,Palmer JM,Pollak T,Youngkin D,Brooks BR,Lanagan C,S

    更新日期:2011-12-25 00:00:00

  • Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor.

    abstract::We present here a Sleeping Beauty-based transposition system that offers a simple and efficient way to investigate the regulatory architecture of mammalian chromosomes in vivo. With this system, we generated several hundred mice and embryos, each with a regulatory sensor inserted at a random genomic position. This lar...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.790

    authors: Ruf S,Symmons O,Uslu VV,Dolle D,Hot C,Ettwiller L,Spitz F

    更新日期:2011-03-20 00:00:00

  • Mice lacking the vitamin D receptor exhibit impaired bone formation, uterine hypoplasia and growth retardation after weaning.

    abstract::1 alpha,25-Dihydroxyvitamin D3[1 alpha,25(OH)2D3], an active form of vitamin D, has roles in many biological phenomena such as calcium homeostasis and bone formation, which are thought to be mediated by the 1 alpha,25(OH)2D3 receptor (VDR), a member of the nuclear hormone receptor superfamily. However, the molecular b...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0897-391

    authors: Yoshizawa T,Handa Y,Uematsu Y,Takeda S,Sekine K,Yoshihara Y,Kawakami T,Arioka K,Sato H,Uchiyama Y,Masushige S,Fukamizu A,Matsumoto T,Kato S

    更新日期:1997-08-01 00:00:00