Coupling Bacterial Activity Measurements with Cell Sorting by Flow Cytometry.

abstract：:Peatland testate amoebae (TA) are well-established bioindicators for depth to water table (DWT), but effects of hydrological changes on TA communities have never been tested experimentally. We tested this in a field experiment by placing Sphagnum carpets (15 cm diameter) collected in hummock, lawn and pool microsites ...

journal_title：Microbial ecology

authors： Marcisz K,Fournier B,Gilbert D,Lamentowicz M,Mitchell EA

更新日期：2014-05-01 00:00:00

abstract：:Marine Crenarchaeota represent a widespread and abundant microbial group in marine ecosystems. Here, we investigated the abundance, diversity, and distribution of planktonic Crenarchaeota in the epi-, meso-, and bathypelagic zones at three stations in the South China Sea (SCS) by analysis of crenarchaeal 16S rRNA gene...

journal_title：Microbial ecology

authors： Hu A,Jiao N,Zhang CL

更新日期：2011-10-01 00:00:00

abstract：:Crop residues are a crucial ecological niche with a major biological impact on agricultural ecosystems. In this study, we used a combined diachronic and synchronic field experiment based on wheat-oilseed rape rotations to test the hypothesis that plant is a structuring factor of microbial communities in crop residues,...

journal_title：Microbial ecology

authors： Kerdraon L,Balesdent MH,Barret M,Laval V,Suffert F

更新日期：2019-05-01 00:00:00

abstract：:The phyllosphere of the Brazilian Atlantic Forest has been estimated to contain several million bacterial species that are associated with approximately 20000 plant species. Despite the high bacterial diversity in the phyllosphere, the function of these microorganisms and the mechanisms driving their community assembl...

journal_title：Microbial ecology

authors： Lambais MR,Barrera SE,Santos EC,Crowley DE,Jumpponen A

更新日期：2017-01-01 00:00:00

abstract：:Aquatic ecosystems worldwide have been substantially altered by human activities, which often induce changes in multiple factors that can interact to produce complex effects. Here, we evaluated the combined effects of dissolved nutrients (nitrogen [N] and phosphorus [P]; three levels: concentration found in oligotroph...

journal_title：Microbial ecology

authors： Gomes PP,Ferreira V,Tonin AM,Medeiros AO,Júnior JFG

更新日期：2018-05-01 00:00:00

abstract：:Phyllosphere bacteria on ornamental plants were characterized based on their diversity and activity towards the removal of polycyclic aromatic hydrocarbons (PAHs), the major air pollutants in urban area. The amounts of PAH-degrading bacteria were about 1-10% of the total heterotrophic phyllosphere populations and cons...

journal_title：Microbial ecology

authors： Yutthammo C,Thongthammachat N,Pinphanichakarn P,Luepromchai E

更新日期：2010-02-01 00:00:00

abstract：:Sediment samples were collected monthly from Acton Lake, a eutrophic reservoir located in an agricultural region of southwestern Ohio, from three stations (River, Middle, and Dam) during the period May 1995 through January 1997. Sedimentary microbial biomass and community structures from these stations were studied us...

journal_title：Microbial ecology

authors： Smoot JC,Findlay RH

更新日期：2001-10-01 00:00:00

abstract：:Nitrogen fixation (C2H2 reduction) by epiphylls on coffee,Coffea arabica, grown in sites with different degrees of shade, was determined. Coffee leaves with nitrogen-fixing epiphylls were found in all sites in approximately equal numbers. Rates of C2H2 reduction were similar for all sites and throughout the year, aver...

journal_title：Microbial ecology

authors： Roskoski JP

更新日期：1980-12-01 00:00:00

abstract：:Discula umbrinella, a fungal endophyte of oak species, colonizes and reproduces on leaves of Quercus alba and Q. rubra in forest ecosystems. Twenty-nine isolates collected from leaves of both oak species (16 from Q. alba and 13 from Q. rubra) were assayed for oak species preference and genetic variation based on prime...

journal_title：Microbial ecology

authors： Cohen SD

更新日期：2006-10-01 00:00:00

abstract：:Although ammonia-oxidizing bacteria (AOB) are likely to play a key role in the soil nitrogen cycle, we have only a limited understanding of how the diversity and composition of soil AOB communities change across ecosystem types. We examined 23 soils collected from across North America and used sequence-based analyses ...

journal_title：Microbial ecology

authors： Fierer N,Carney KM,Horner-Devine MC,Megonigal JP

更新日期：2009-08-01 00:00:00

abstract：:Microbial diversity was evaluated in an anoxic zone of Tucuruí Hydroelectric Power Station reservoir in Brazilian Amazonia using a culture-independent approach by amplifying and sequencing fragments of the 16S rRNA gene using metagenomic DNA as a template. Samples obtained from the photic, aphotic (40 m) and sediment ...

journal_title：Microbial ecology

authors： Graças DA,Miranda PR,Baraúna RA,McCulloch JA,Ghilardi R Jr,Schneider MP,Silva A

更新日期：2011-11-01 00:00:00

abstract：:With this study, we present first data on the diversity of aerobic methanotrophic bacteria (MOB) in an Arctic permafrost active layer soil of the Lena Delta, Siberia. Applying denaturing gradient gel electrophoresis and cloning of 16S ribosomal ribonucleic acid (rRNA) and pmoA gene fragments of active layer samples, w...

journal_title：Microbial ecology

authors： Liebner S,Rublack K,Stuehrmann T,Wagner D

更新日期：2009-01-01 00:00:00

abstract：:Energy redistribution between growth and maintenance in salt-stressed cells is especially important for bacteria living in estuarine environments. In this study, Gram-negative bacterium Vibrio sp. DSM14379, isolated from the estuarine waters of the northern Adriatic Sea, was grown aerobically in a peptone-yeast extrac...

journal_title：Microbial ecology

authors： Danevčič T,Stopar D

更新日期：2011-07-01 00:00:00

abstract：:Endophytes are microbial symbionts living inside plants and have been extensively researched in recent decades for their functions associated with plant responses to environmental stress. We conducted a meta-analysis of endophyte effects on host plants' growth and fitness in response to three abiotic stress factors: d...

journal_title：Microbial ecology

authors： Rho H,Hsieh M,Kandel SL,Cantillo J,Doty SL,Kim SH

更新日期：2018-02-01 00:00:00

abstract：:Understanding the dynamics of plant-associated microbial communities within agriculture is well documented. However, the ecological processes that assemble the plant microbiome are not well understood. This study elucidates the relative dominance of assembly processes across plant compartments (root, stem, and leaves)...

journal_title：Microbial ecology

authors： Moroenyane I,Mendes L,Tremblay J,Tripathi B,Yergeau É

更新日期：2021-01-18 00:00:00

abstract：:Understanding the role of microbiota as reproductive barriers or sources of adaptive novelty in the fundamental biological phenomenon of speciation is an exciting new challenge necessitating exploration of microbiota variation in wild interbreeding species. We focused on two interbreeding cyprinid species, Chondrostom...

journal_title：Microbial ecology

authors： Guivier E,Martin JF,Pech N,Ungaro A,Chappaz R,Gilles A

更新日期：2018-04-01 00:00:00

abstract：:High specific activity(14)C-labeled glucose, succinate, acetate, salicylate, and amino acids were used to examine carbon metabolism by the microbial community of Pahokee muck (aLithic medisaprist), a drained, cultivated soil of the Florida Everglades. Variations in carbon oxidation were observed from the end of the we...

journal_title：Microbial ecology

authors： Tate RL 3rd

更新日期：1980-12-01 00:00:00

abstract：:Mono Lake is a meromictic, hypersaline, soda lake that harbors a diverse and abundant microbial community. A previous report documented the high viral abundance in Mono Lake, and pulsed-field gel electrophoresis analysis of viral DNA from lake water samples showed a diverse population based on a broad range of viral g...

journal_title：Microbial ecology

authors： Sabet S,Chu W,Jiang SC

更新日期：2006-05-01 00:00:00

abstract：:Since 2008, the kiwifruit industry has been devastated by a pandemic outbreak of Pseudomonas syringae pv. actinidiae (Psa), the causal agent of bacterial canker. This disease has become the most significant limiting factor in kiwifruit production. Psa colonizes different organs of the host plant, causing a specific sy...

journal_title：Microbial ecology

authors： Donati I,Cellini A,Sangiorgio D,Vanneste JL,Scortichini M,Balestra GM,Spinelli F

更新日期：2020-07-01 00:00:00

abstract：:Facultative methylotrophic bacteria of the genus Methylobacterium are consistently found in association with plants, particularly in the phyllosphere. To gain a better understanding of the mechanisms underlying the dispersal and occurrence of Methylobacterium on plants, diverse strains were isolated, identified, and s...

journal_title：Microbial ecology

authors： Knief C,Frances L,Vorholt JA

更新日期：2010-08-01 00:00:00

abstract：:Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous pollutants of the environment. But is their microbial degradation equally wide in distribution? We estimated the PAH degradation capacity of 13 soils ranging from pristine locations (total PAHs approximately 0.1 mg kg(-1)) to heavily polluted industrial sites (tot...

journal_title：Microbial ecology

authors： Johnsen AR,Karlson U

更新日期：2005-11-01 00:00:00

abstract：:In dryland regions, biological soil crusts (BSCs) have numerous important ecosystem functions. Crust species and functions are, however, highly spatially heterogeneous and remain poorly understood at a range of scales. In this study, chlorophyll fluorescence imaging was used to quantify millimeter-scale patterns in th...

journal_title：Microbial ecology

authors： Lan S,Thomas AD,Tooth S,Wu L,Hu C

更新日期：2019-11-01 00:00:00

abstract：:The marine chrysophyteMonochrysis lutheri was grown in phosphorus-limited continuous cultures at temperatures of 15°, 18.8° and 23°C. The effect of temperature on the maximum growth rate was well-defined by the Arrhenius equation, but the Q10 for this alga (1.7) was somewhat lower than has been determined previously f...

journal_title：Microbial ecology

authors： Goldman JC

更新日期：1979-09-01 00:00:00

abstract：:Propionate degradation is a critical step during the conversion of complex organic matter under methanogenic conditions, and it requires a syntrophic cooperation between propionate-oxidizing bacteria and methanogenic archaea. Increasing evidences suggest that interspecies electron transfer for syntrophic metabolism is...

journal_title：Microbial ecology

authors： Zhuang L,Ma J,Tang J,Tang Z,Zhou S

更新日期：2017-05-01 00:00:00

abstract：:Quorum sensing (QS) signals have been considered to play important roles in biofilm development and in the attractiveness of biofilms to higher organisms in marine ecosystem. In this study, bacterial QS signalsacylated homoserine lactone derivatives (AHLs) were detected in 2-, 4-, and 6-day-old subtidal biofilms by us...

journal_title：Microbial ecology

authors： Huang YL,Dobretsov S,Ki JS,Yang LH,Qian PY

更新日期：2007-08-01 00:00:00

abstract：:The hypothesis tested in this present study was that the ectomycorrhizosphere effect on the bacterial community was not root-growth-dependent. The impacts of ectomycorrhizal infection (Pisolithus albus COI007) and a chemical fertilization to reproduce the fungal effect on root growth were examined on (1) the structure...

journal_title：Microbial ecology

authors： Assigbetse K,Gueye M,Thioulouse J,Duponnois R

更新日期：2005-10-01 00:00:00

abstract：:Microbiota presumably plays an essential role in inhibiting pathogen colonization and in the maintenance of health in oysters, but limited data exist concerning their different growth phases and conditions. We analyzed the bacterial microbiota composition of two commercial oysters: Crassostrea gigas and Crassostrea co...

journal_title：Microbial ecology

authors： Trabal N,Mazón-Suástegui JM,Vázquez-Juárez R,Asencio-Valle F,Morales-Bojórquez E,Romero J

更新日期：2012-08-01 00:00:00

abstract：:A survey was made of the yeast communities isolated from necrotic tissue of 4 species of prickly-pear cacti (Opuntia stricta, O. tomentosa, O. monacantha, andO. streptacantha) which have colonized in Australia. Yeast communities were sampled from a number of localities and at different times. Cactus specific yeasts ac...

journal_title：Microbial ecology

authors： Barker JS,East PD,Phaff HJ,Miranda M

更新日期：1984-12-01 00:00:00

abstract：:Actinobacteria are major producers of secondary metabolites; however, it is unclear how they are distributed in the environment. DNA was extracted from forest, pasture and cultivated soils, street sediments (dust and material in place), and sediments affected by animal activity (e.g. guano, vermicompost) and character...

journal_title：Microbial ecology

authors： Hill P,Krištůfek V,Dijkhuizen L,Boddy C,Kroetsch D,van Elsas JD

更新日期：2011-02-01 00:00:00

abstract：:Our goals were to evaluate the tolerance of mesorhizobia to acid and alkaline conditions as well as to investigate whether acid tolerance is related to the species or the origin site of the isolates. In addition, to investigate the molecular basis of acid tolerance, the expression of chaperone genes groEL and dnaKJ wa...

journal_title：Microbial ecology

authors： Brígido C,Oliveira S

更新日期：2013-01-01 00:00:00