Is Friedreich ataxia an epigenetic disorder?

Abstract:

: Friedreich ataxia (FRDA) is a debilitating and frequently fatal neurological disorder that is recessively inherited. It belongs to the group of genetic disorders known as the Repeat Expansion Diseases, in which pathology arises from the deleterious consequences of the inheritance of a tandem repeat array whose repeat number exceeds a critical threshold. In the case of FRDA, the repeat unit is the triplet GAA•TTC and the tandem array is located in the first intron of the frataxin (FXN) gene. Pathology arises because expanded alleles make lower than normal levels of mature FXN mRNA and thus reduced levels of frataxin, the FXN gene product. The repeats form a variety of unusual DNA structures that have the potential to affect gene expression in a number of ways. For example, triplex formation in vitro and in bacteria leads to the formation of persistent RNA:DNA hybrids that block transcription. In addition, these repeats have been shown to affect splicing in model systems. More recently, it has been shown that the region flanking the repeats in the FXN gene is enriched for epigenetic marks characteristic of transcriptionally repressed regions of the genome. However, exactly how repeats in an intron cause the FXN mRNA deficit in FRDA has been the subject of much debate. Identifying the mechanism or mechanisms responsible for the FXN mRNA deficit in FRDA is important for the development of treatments for this currently incurable disorder. This review discusses evidence for and against different models for the repeat-mediated mRNA deficit.

journal_name

Clin Epigenetics

journal_title

Clinical epigenetics

authors

Kumari D,Usdin K

doi

10.1186/1868-7083-4-2

subject

Has Abstract

pub_date

2012-01-30 00:00:00

pages

2

issue

1

eissn

1868-7075

issn

1868-7083

pii

1868-7083-4-2

journal_volume

4

pub_type

杂志文章
  • Reduced mitochondrial D-loop methylation levels in sporadic amyotrophic lateral sclerosis.

    abstract:BACKGROUND:Mitochondrial dysregulation and aberrant epigenetic mechanisms have been frequently reported in neurodegenerative diseases, including amyotrophic lateral sclerosis (ALS), and several researchers suggested that epigenetic dysregulation in mitochondrial DNA (mtDNA) could contribute to the neurodegenerative pro...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-020-00933-2

    authors: Stoccoro A,Smith AR,Mosca L,Marocchi A,Gerardi F,Lunetta C,Cereda C,Gagliardi S,Lunnon K,Migliore L,Coppedè F

    更新日期:2020-09-11 00:00:00

  • Identification and validation of SRY-box containing gene family member SOX30 methylation as a prognostic and predictive biomarker in myeloid malignancies.

    abstract:Background:Methylation-associated SOX family genes have been proved to be involved in multiple essential processes during carcinogenesis and act as potential biomarkers for cancer diagnosis, staging, prediction of prognosis, and monitoring of response to therapy. Herein, we revealed SOX30 methylation and its clinical i...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-018-0523-y

    authors: Zhou JD,Wang YX,Zhang TJ,Li XX,Gu Y,Zhang W,Ma JC,Lin J,Qian J

    更新日期:2018-07-05 00:00:00

  • Genome-wide assessment of DNA methylation in mouse oocytes reveals effects associated with in vitro growth, superovulation, and sexual maturity.

    abstract:BACKGROUND:In vitro follicle culture (IFC), as applied in the mouse system, allows the growth and maturation of a large number of immature preantral follicles to become mature and competent oocytes. In the human oncofertility clinic, there is increasing interest in developing this technique as an alternative to ovarian...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-019-0794-y

    authors: Saenz-de-Juano MD,Ivanova E,Billooye K,Herta AC,Smitz J,Kelsey G,Anckaert E

    更新日期:2019-12-19 00:00:00

  • Development of 5' LTR DNA methylation of latent HIV-1 provirus in cell line models and in long-term-infected individuals.

    abstract:BACKGROUND:Human immunodeficiency virus type 1 (HIV-1) latency represents the major barrier to virus eradication in infected individuals because cells harboring latent HIV-1 provirus are not affected by current antiretroviral therapy (ART). We previously demonstrated that DNA methylation of HIV-1 long terminal repeat (...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-016-0185-6

    authors: Trejbalová K,Kovářová D,Blažková J,Machala L,Jilich D,Weber J,Kučerová D,Vencálek O,Hirsch I,Hejnar J

    更新日期:2016-02-19 00:00:00

  • Association between variation of circulating 25-OH vitamin D and methylation of secreted frizzled-related protein 2 in colorectal cancer.

    abstract:BACKGROUNDS:Colorectal cancer (CRC) results from the accumulation of epigenetic and genetic changes in colon cells during neoplasic transformation, which the activation of Wingless (Wnt) signaling pathway is a common mechanism for CRC initiation. The Wnt pathway is mainly regulated by Wnt antagonists, as secreted frizz...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-020-00875-9

    authors: Boughanem H,Cabrera-Mulero A,Hernández-Alonso P,Clemente-Postigo M,Casanueva FF,Tinahones FJ,Morcillo S,Crujeiras AB,Macias-Gonzalez M

    更新日期:2020-06-09 00:00:00

  • Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic health.

    abstract:BACKGROUND:Tobacco smoking is a risk factor for multiple diseases, including cardiovascular disease and diabetes. Many smoking-associated signals have been detected in the blood methylome, but the extent to which these changes are widespread to metabolically relevant tissues, and impact gene expression or metabolic hea...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-018-0558-0

    authors: Tsai PC,Glastonbury CA,Eliot MN,Bollepalli S,Yet I,Castillo-Fernandez JE,Carnero-Montoro E,Hardiman T,Martin TC,Vickers A,Mangino M,Ward K,Pietiläinen KH,Deloukas P,Spector TD,Viñuela A,Loucks EB,Ollikainen M,Kelsey K

    更新日期:2018-10-20 00:00:00

  • Premature aging of leukocyte DNA methylation is associated with type 2 diabetes prevalence.

    abstract:BACKGROUND:Type 2 diabetes mellitus (T2D) is highly prevalent in Middle-Eastern and North African Arab populations, but the molecular basis for this susceptibility is unknown. Altered DNA methylation levels were reported in insulin-secreting and responding tissues, but whether methylation in accessible tissues such as ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-015-0069-1

    authors: Toperoff G,Kark JD,Aran D,Nassar H,Ahmad WA,Sinnreich R,Azaiza D,Glaser B,Hellman A

    更新日期:2015-03-28 00:00:00

  • Racial differences in IGF1 methylation and birth weight.

    abstract:BACKGROUND:The birth weight of Black neonates in the United States is consistently smaller than that of their White counterparts. Epigenetic differences between the races may be involved in such disparities. The goal of these analyses was to model the role of IGF1 methylation in mediating the association between race a...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-015-0080-6

    authors: Straughen JK,Sipahi L,Uddin M,Misra DP,Misra VK

    更新日期:2015-04-21 00:00:00

  • The role of microRNA-1246 in the regulation of B cell activation and the pathogenesis of systemic lupus erythematosus.

    abstract:BACKGROUND:The pathogenesis of systemic lupus erythematosus (SLE) has not yet been completely elucidated. One of the hallmarks of SLE is the production of autoantibodies by uncontrolled over-activated B cells. Early B cell factor 1 (EBF1) contributes to the development, activation, and proliferation of B cells through ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-015-0063-7

    authors: Luo S,Liu Y,Liang G,Zhao M,Wu H,Liang Y,Qiu X,Tan Y,Dai Y,Yung S,Chan TM,Lu Q

    更新日期:2015-03-14 00:00:00

  • Genome-wide DNA methylation profiling of CD8+ T cells shows a distinct epigenetic signature to CD4+ T cells in multiple sclerosis patients.

    abstract:BACKGROUND:Multiple sclerosis (MS) is thought to be a T cell-mediated autoimmune disorder. MS pathogenesis is likely due to a genetic predisposition triggered by a variety of environmental factors. Epigenetics, particularly DNA methylation, provide a logical interface for environmental factors to influence the genome. ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-015-0152-7

    authors: Maltby VE,Graves MC,Lea RA,Benton MC,Sanders KA,Tajouri L,Scott RJ,Lechner-Scott J

    更新日期:2015-11-05 00:00:00

  • Integrative DNA methylome analysis of pan-cancer biomarkers in cancer discordant monozygotic twin-pairs.

    abstract:BACKGROUND:A key focus in cancer research is the discovery of biomarkers that accurately diagnose early lesions in non-invasive tissues. Several studies have identified malignancy-associated DNA methylation changes in blood, yet no general cancer biomarker has been identified to date. Here, we explore the potential of ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-016-0172-y

    authors: Roos L,van Dongen J,Bell CG,Burri A,Deloukas P,Boomsma DI,Spector TD,Bell JT

    更新日期:2016-01-20 00:00:00

  • DNA methylation profiling in peripheral lung tissues of smokers and patients with COPD.

    abstract:BACKGROUND:Epigenetics changes have been shown to be affected by cigarette smoking. Cigarette smoke (CS)-mediated DNA methylation can potentially affect several cellular and pathophysiological processes, acute exacerbations, and comorbidity in the lungs of patients with chronic obstructive pulmonary disease (COPD). We ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-017-0335-5

    authors: Sundar IK,Yin Q,Baier BS,Yan L,Mazur W,Li D,Susiarjo M,Rahman I

    更新日期:2017-04-14 00:00:00

  • Combined inhibition of BET proteins and class I HDACs synergistically induces apoptosis in urothelial carcinoma cell lines.

    abstract:Background:New efficient therapies for urothelial carcinoma (UC) are urgently required. Small-molecule drugs targeting chromatin regulators are reasonable candidates because these regulators are frequently mutated or deregulated in UC. Indeed, in previous work, Romidepsin, which targets class I histone deacetylases (HD...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-017-0434-3

    authors: Hölscher AS,Schulz WA,Pinkerneil M,Niegisch G,Hoffmann MJ

    更新日期:2018-01-04 00:00:00

  • Individual epigenetic status of the pathogenic D4Z4 macrosatellite correlates with disease in facioscapulohumeral muscular dystrophy.

    abstract:BACKGROUND:Both forms of facioscapulohumeral muscular dystrophy (FSHD) are associated with aberrant epigenetic regulation of the chromosome 4q35 D4Z4 macrosatellite. Chromatin changes due to large deletions of heterochromatin (FSHD1) or mutations in chromatin regulatory proteins (FSHD2) lead to relaxation of epigenetic...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-015-0072-6

    authors: Jones TI,King OD,Himeda CL,Homma S,Chen JC,Beermann ML,Yan C,Emerson CP Jr,Miller JB,Wagner KR,Jones PL

    更新日期:2015-03-29 00:00:00

  • DNA methylation modules associate with incident cardiovascular disease and cumulative risk factor exposure.

    abstract:BACKGROUND:Epigenome-wide association studies using DNA methylation have the potential to uncover novel biomarkers and mechanisms of cardiovascular disease (CVD) risk. However, the direction of causation for these associations is not always clear, and investigations to-date have often failed to replicate at the level o...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-019-0705-2

    authors: Westerman K,Sebastiani P,Jacques P,Liu S,DeMeo D,Ordovás JM

    更新日期:2019-10-15 00:00:00

  • Genome-wide microRNA expression profiling in placentae from frozen-thawed blastocyst transfer.

    abstract:BACKGROUND:Frozen-thawed embryo transfer (FET) is increasingly available for the improvement of the success rate of assisted reproductive technologies other than fresh embryo transfer (ET). There have been numerous findings that FET provides better obstetric and perinatal outcomes. However, the birth weight of infants ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-017-0379-6

    authors: Hiura H,Hattori H,Kobayashi N,Okae H,Chiba H,Miyauchi N,Kitamura A,Kikuchi H,Yoshida H,Arima T

    更新日期:2017-08-03 00:00:00

  • Cooperative effect of chidamide and chemotherapeutic drugs induce apoptosis by DNA damage accumulation and repair defects in acute myeloid leukemia stem and progenitor cells.

    abstract:BACKGROUND:Many conventional chemotherapeutic drugs are known to be involved in DNA damage, thus ultimately leading to apoptosis of leukemic cells. However, they fail to completely eliminate leukemia stem cells (LSCs) due to their higher DNA repair capacity of cancer stem cells than that of bulk cancer cells, which bec...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-017-0377-8

    authors: Li Y,Wang Y,Zhou Y,Li J,Chen K,Zhang L,Deng M,Deng S,Li P,Xu B

    更新日期:2017-08-14 00:00:00

  • Epigenetic associations of type 2 diabetes and BMI in an Arab population.

    abstract:BACKGROUND:The prevalence of type 2 diabetes (T2D) and obesity has dramatically increased within a few generations, reaching epidemic levels. In addition to genetic risk factors, epigenetic mechanisms triggered by changing environment are investigated for their role in the pathogenesis of these complex diseases. Epigen...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-016-0177-6

    authors: Al Muftah WA,Al-Shafai M,Zaghlool SB,Visconti A,Tsai PC,Kumar P,Spector T,Bell J,Falchi M,Suhre K

    更新日期:2016-01-28 00:00:00

  • Bronchial biopsy specimen as a surrogate for DNA methylation analysis in inoperable lung cancer.

    abstract:Background:This study was aimed at understanding whether bronchial biopsy specimen can be used as a surrogate for DNA methylation analysis in surgically resected lung cancer. Methods:A genome-wide methylation was analyzed in 42 surgically resected tumor tissues, 136 bronchial washing, 12 sputum, and 8 bronchial biopsy...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-017-0432-5

    authors: Um SW,Kim HK,Kim Y,Lee BB,Kim D,Han J,Kim H,Shim YM,Kim DH

    更新日期:2017-12-20 00:00:00

  • DNA methylation and repressive histones in the promoters of PD-1, CTLA-4, TIM-3, LAG-3, TIGIT, PD-L1, and galectin-9 genes in human colorectal cancer.

    abstract:BACKGROUND:Colorectal cancer (CRC) is the third most commonly diagnosed human malignancy worldwide. Upregulation of inhibitory immune checkpoints by tumor-infiltrating immune cells (TIICs) or their ligands by tumor cells leads to tumor evasion from host immunosurveillance. Changes in DNA methylation pattern and enrichm...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-018-0539-3

    authors: Sasidharan Nair V,Toor SM,Taha RZ,Shaath H,Elkord E

    更新日期:2018-08-06 00:00:00

  • Genome-wide methylomic analysis in individuals with HNF1B intragenic mutation and 17q12 microdeletion.

    abstract::Heterozygous mutation of the transcription factor HNF1B is the most common cause of monogenetic developmental renal disease. Disease-associated mutations fall into two categories: HNF1B intragenic mutations and a 1.3 Mb deletion at chromosome 17q12. An increase in neurodevelopmental disorders has been observed in indi...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-018-0530-z

    authors: Clissold RL,Ashfield B,Burrage J,Hannon E,Bingham C,Mill J,Hattersley A,Dempster EL

    更新日期:2018-07-18 00:00:00

  • The elements of human cyclin D1 promoter and regulation involved.

    abstract::Cyclin D1 is a cell cycle machine, a sensor of extracellular signals and plays an important role in G1-S phase progression. The human cyclin D1 promoter contains multiple transcription factor binding sites such as AP-1, NF-қB, E2F, Oct-1, and so on. The extracellular signals functions through the signal transduction p...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1007/s13148-010-0018-y

    authors: Guo ZY,Hao XH,Tan FF,Pei X,Shang LM,Jiang XL,Yang F

    更新日期:2011-08-01 00:00:00

  • Sperm imprinting integrity in seminoma patients?

    abstract:BACKGROUND:Testicular germ cell tumor such as seminoma is strongly associated with male reproductive problems commonly associated with the alteration of sperm parameters as described in testicular dysgenesis syndrome. Interestingly, numerous studies have reported that the precursor of germ cell cancer, germ cell neopla...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-018-0559-z

    authors: Bruno C,Blagoskonov O,Barberet J,Guilleman M,Daniel S,Tournier B,Binquet C,Choux C,Fauque P

    更新日期:2018-10-19 00:00:00

  • Suffocating cancer: hypoxia-associated epimutations as targets for cancer therapy.

    abstract:: Lower than normal levels of oxygen (hypoxia) is a hallmark of all solid tumours rendering them frequently resistant to both radiotherapy and chemotherapy regimes. Furthermore, tumour hypoxia and activation of the hypoxia inducible factor (HIF) transcriptional pathway is associated with poorer prognosis. Driven by bot...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/1868-7083-3-9

    authors: Thirlwell C,Schulz L,Dibra H,Beck S

    更新日期:2011-12-05 00:00:00

  • Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsia.

    abstract:BACKGROUND:Preeclampsia is one of the leading causes of fetal and maternal morbidity and mortality worldwide. Preterm babies of mothers with early onset preeclampsia (EOPE) are at higher risks for various diseases later on in life, including cardiovascular diseases. We hypothesized that genome-wide epigenetic alteratio...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-015-0052-x

    authors: Ching T,Ha J,Song MA,Tiirikainen M,Molnar J,Berry MJ,Towner D,Garmire LX

    更新日期:2015-03-13 00:00:00

  • High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting.

    abstract:BACKGROUND:The most common sex chromosomal aneuploidy in males is Klinefelter syndrome, which is characterized by at least one supernumerary X chromosome. While these men have long been considered infertile, focal spermatogenesis can be observed in some patients, and sperm can be surgically retrieved and used for artif...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-019-0720-3

    authors: Laurentino S,Heckmann L,Di Persio S,Li X,Meyer Zu Hörste G,Wistuba J,Cremers JF,Gromoll J,Kliesch S,Schlatt S,Neuhaus N

    更新日期:2019-08-28 00:00:00

  • RRx-001, an epigenetic-based radio- and chemosensitizer, has vascular normalizing effects on SCCVII and U87 tumors.

    abstract:BACKGROUND:The tumor-specific microregional effects of the anticancer agent RRx-001, a novel epigenetic-based radio/chemosensitizer with nitrogen oxide-donating properties in phase II clinical trials, were investigated with whole tissue section quantitative immunohistological staining in mouse SCCVII and human U87 tumo...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-016-0220-7

    authors: Oronsky B,Scicinski J,Cabrales P,Minchinton A

    更新日期:2016-05-11 00:00:00

  • The tumor suppressor Zinc finger protein 471 suppresses breast cancer growth and metastasis through inhibiting AKT and Wnt/β-catenin signaling.

    abstract:BACKGROUND:Zinc-finger protein 471 (ZNF471) is a member of the Krüppel-associated box domain zinc finger protein (KRAB-ZFP) family. ZNF471 is methylated in squamous cell carcinomas of tongue, stomach and esophageal. However, its role in breast carcinogenesis remains elusive. Here, we studied its expression, functions, ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-020-00959-6

    authors: Tao C,Luo J,Tang J,Zhou D,Feng S,Qiu Z,Putti TC,Xiang T,Tao Q,Li L,Ren G

    更新日期:2020-11-17 00:00:00

  • Adverse childhood experiences, DNA methylation age acceleration, and cortisol in UK children: a prospective population-based cohort study.

    abstract:BACKGROUND:Epigenetic mechanisms may partly explain the persistent effects of adverse childhood experiences (ACEs) on health outcomes in later life. DNA methylation can predict chronological age, and advanced methylation-predicted age beyond chronological age (DNA methylation age acceleration) is associated with ACEs, ...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/s13148-020-00844-2

    authors: Tang R,Howe LD,Suderman M,Relton CL,Crawford AA,Houtepen LC

    更新日期:2020-04-07 00:00:00

  • Changes in DNA methylation at the aryl hydrocarbon receptor repressor may be a new biomarker for smoking.

    abstract:BACKGROUND:Smoking is the largest preventable cause of morbidity and mortality in the United States. In previous work, we demonstrated that altered DNA methylation at the aryl hydrocarbon receptor repressor (AHRR) is correlated with self-reported smoking in 19-year-old African Americans with relatively low levels of sm...

    journal_title:Clinical epigenetics

    pub_type: 杂志文章

    doi:10.1186/1868-7083-5-19

    authors: Philibert RA,Beach SR,Lei MK,Brody GH

    更新日期:2013-10-11 00:00:00